RnoINT0162868 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81701230-81701610:+
Coord C1 exon
chr9:81701230-81701432
Coord A exon
chr9:81701433-81701531
Coord C2 exon
chr9:81701532-81701610
Length
99 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TGCCTCCCTTTGTTCTGCAGTGT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GGCATGACCTTGGCCAAAGAGATCCGAGACCAGGAGCGGGGTGGACGCACCTACGTAGGCGTGGTGGATGGGGAGAATGAAGGGGACTCCCCACAGCTGATGGCAATTATGAACCACGTGCTGGGCCCACGCAAGGAACTAAAGGCTGCAATTTCTGACTCAGTGGTGGAGCCGGCCGCTAAGGCTGCACTCAAGCTGTACCA
Seq A exon
GTGAGTTCTGGCCTGGGGCCTTCCTGGGTGCTGGGGACTTCCTGGGCTAGGGTGCTCAGCCAGCAGCGCCTCTTATCCATGCCTCCCTTTGTTCTGCAG
Seq C2 exon
TGTGTCTGATTCAGAAGGAAAAATGGTGGTTAGAGAAGTTGCTACTCAGCCACTCACACAGGACTTGCTCAGCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
NA
C2:
PF0062617=Gelsolin=PU(21.8=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATGAACCACGTGCTGGGC
R:
CTCATGGCTGAGCAAGTCCTG
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]