DreINT0036235 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:214798-215172:-
Coord C1 exon
chr11:214967-215172
Coord A exon
chr11:214877-214966
Coord C2 exon
chr11:214798-214876
Length
90 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
ACAATGGTCCTGCTGTGCAGTGT
3' ss Score
5.01
Exon sequences
Seq C1 exon
GGCATGATGCTGGCCAAGGATATCCGGGACCGAGAGCGCGGCGGGCGGGCAGAGATCGGGGTGATTGAGGGCGATGCGGAGGCCGCCGCTCCGCTGCTGATGCAGGTGATGCTGAGCATTCTGGGAGAGCGACCCTCGACCCTACCCAGCGGCACGCCGGACGACGTCACTGACCGCGAGCAGATGGCCAAACTCACCCTCTACCA
Seq A exon
GTGAGTGCCCTCGGCTAACTGGACTATCTGTGATGTATACTGGTGCTGGTGTAAGATCCGGCCTAATCTAACAATGGTCCTGCTGTGCAG
Seq C2 exon
TGTGTCAGATGCCAACGGGACGATGCAGATCACCGAGATCGCAACCAGTCCACTAACCCAGGACCTGCTGAATCATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.5=43.5)
A:
NA
C2:
PF0062617=Gelsolin=PU(20.8=59.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCATTCTGGGAGAGCGA
R:
ATGATTCAGCAGGTCCTGGGT
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]