RnoINT0024217 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70299164-70299873:+
Coord C1 exon
chr7:70299164-70299366
Coord A exon
chr7:70299367-70299794
Coord C2 exon
chr7:70299795-70299873
Length
428 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TAATCTCTCTTCTTCACCAGTGT
3' ss Score
6.9
Exon sequences
Seq C1 exon
GCTATGCTTCTAGCAAAGGACATTCGGGACAGGGAGCGAGGGGGCCGAGCTGAAATCGGGGTGATTGAGGGAGACAAAGAGGCAGCCAGCCCAGAACTGATGACGGTTCTCCAGAATACCCTTGGCCGACGCTCCATTATCAAGCCCGCAGTTCCTGATGAGGTCACCGATCAGCAGCAGAAGTCAACCATCATGTTGTATCA
Seq A exon
GTGAGTGCTTTAGCTTGGCTGTGGGCTGGAGGTTGGTTGTGGAGAGATGTCCCCTAGAACAGCAGGCATTTGGCTTGGGTAGAGGCATCTGCCTTTGCTCTTAGTTCATCCTTTTTAAGTGTATCTCCTACAAGGAGCTCAGAAACAGCCCCTCTCAGAGAGGCAGCTATCCTCCGTTCCTGTTAAAAAGTCTCCTGACCTACGCGTGTAACCTTTCCGGTGTATCCATGCCTAGGGATGTGGATGGGATAGTTTGGGAGAGAGGCTCACAGTCTCTTCTGGAAAACAGAGTATATCTCCCTCTCTGTATTCAAGCCGTGTCTATCTCAGGAAATCCACTCTGTCCAGAAATGCCACACTGAAACATCACTTTAGCCATGGGATACTTCCCAAAGAGAAGGCACAAGCTAATCTCTCTTCTTCACCAG
Seq C2 exon
TGTCTCCGACACAACTGGGCAGCTGTCGGTCACAGAAGTGGCAACAAGGCCCCTGGTCCAGGAGCTACTGAACCATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
NA
C2:
PF0062617=Gelsolin=PU(21.8=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAGGACATTCGGGACAG
R:
TCATGGTTCAGTAGCTCCTGGA
Band lengths:
270-698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]