MmuINT0022346 @ mm9
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126445188-126445897:+
Coord C1 exon
chr10:126445188-126445390
Coord A exon
chr10:126445391-126445818
Coord C2 exon
chr10:126445819-126445897
Length
428 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
AAATCTCTCTCCTTCACCAGTGT
3' ss Score
6.74
Exon sequences
Seq C1 exon
GCTATGCTTCTGGCAAAGGACATTCGGGACAGGGAGCGAGGGGGCCGTGCTGAAATTGGGGTGATTGAGGGAGACAAGGAGGCGGCCAGCCCAGGGCTGATGACAGTCCTCCAGGATACCCTTGGTCGACGCTCCATGATAAAGCCTGCAGTTTCTGATGAGATCATGGACCAACAACAGAAATCAAGTATCATGTTATATCA
Seq A exon
GTGAGTGTTTTAGCTTGGCTGTGGGCTGGAGGCTGGGTGTGGGGAGGTGTCCTCTAGAACAGCAGGCACTCAGCTCGGGTAGAGACGTCGGCCTTTGCTCTTGGTTCGACCTTTCTAAAGGTATCTCCTACAAGGAGCTCAGAGACAGCCCATCTCAGAGAGGCAGCTATCCTCCCTTCTTGTTTAAGTCTCCTGGCCTGCGGGTAGAACCTTTCTGGTGTATCCATGCCTAGGGGTGTGGATGGGATAGTTGTAGAGCGAGATCCACAGTCTCCTTCAGAGAACAGAGTATATCTCCCTCTCTGTATTCAAGCTGTGTCTATCTCCAAAAGTCCACTCTGTCTAGAAATGCCACACTGAAACATCACTTTAGCTATGGGATGCTTCATAAAGAGAAGGCGCCAGGCTAAATCTCTCTCCTTCACCAG
Seq C2 exon
TGTCTCCGACACAGCTGGGCAGCTGTCAGTCACAGAGGTGGCAACAAGGCCCCTGGTCCAGGACCTACTGAACCACGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-Avil:NM_009635:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
NA
C2:
PF0062617=Gelsolin=PU(21.8=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCAAAGGACATTCGGG
R:
CGTGGTTCAGTAGGTCCTGGA
Band lengths:
273-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: