BtaINT0024436 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55991029-55991334:+
Coord C1 exon
chr5:55991029-55991107
Coord A exon
chr5:55991108-55991235
Coord C2 exon
chr5:55991236-55991334
Length
128 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TCCCTGGCCATCTGCTTCAGGAC
3' ss Score
7.7
Exon sequences
Seq C1 exon
TGTCTCGGATTCATCTGGGCAGCTGGTGGTCACAGAGGTAGCGACGAGGCCTCTGGTCCAGGACTTACTGAATCCTGAT
Seq A exon
GTGAGTAGCACTTGGGTGGGCTTGGCTTGGGGTAGCCGGACCTGGCTTCAGAGGCAGGCCCCACGGAGAGGCCTTCCTTATGGTTTCGGGCAGCAGTAACCACTTTTGTCCCTGGCCATCTGCTTCAG
Seq C2 exon
GACTGCTACATCCTGGACCAAAGTGGAACCAAGATCTATGTGTGGAAAGGAAGAGGAGCCACAAAGGTTGAGAAACAGATGGCCATGTCTAAAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(21.8=63.0)
A:
NA
C2:
PF0062617=Gelsolin=FE(41.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCGGATTCATCTGGGCA
R:
CAGGGCTTTAGACATGGCCAT
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]