GgaINT1029673 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22035518-22035818:-
Coord C1 exon
chr7:22035740-22035818
Coord A exon
chr7:22035617-22035739
Coord C2 exon
chr7:22035518-22035616
Length
123 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GCTGTCATCCCCCCTCTCAGGAC
3' ss Score
8.31
Exon sequences
Seq C1 exon
TGTCTCTGATGCCAGTGGGAACCTGGTCATACAAGAGGTAGCAATTCGCCCCTTGACTCAAGACATGCTCCAGCATGAG
Seq A exon
GTGAGATGCTCAAGAGCAGTGCCCGTTTTCCTCAGCAACTTTAACTCAAGTGCCCACCCAAGTGCCTTTTGAAAGATTGAAGCTGCCCTAGGTTCTAATTTCTGCTGTCATCCCCCCTCTCAG
Seq C2 exon
GACTGCTACATCCTTGATCAAGCAGGTCTCAAGATCTTTGTGTGGAAGGGCAAGAATGCCAACAAGGAGGAGAAGCAGCAGGCAATGAGCAGGGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(21.8=63.0)
A:
NA
C2:
PF0062617=Gelsolin=FE(41.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCTGATGCCAGTGGGAA
R:
CAGGGCCCTGCTCATTGC
Band lengths:
178-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]