RnoINT0162869 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81701532-81701863:+
Coord C1 exon
chr9:81701532-81701610
Coord A exon
chr9:81701611-81701764
Coord C2 exon
chr9:81701765-81701863
Length
154 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTTTCTCTATTGGCTCTAGGAC
3' ss Score
9.79
Exon sequences
Seq C1 exon
TGTGTCTGATTCAGAAGGAAAAATGGTGGTTAGAGAAGTTGCTACTCAGCCACTCACACAGGACTTGCTCAGCCATGAG
Seq A exon
GTGAGAGGGTCTGGAGGACCCCAAGCAAGGGACACCTATAAAATGCTAATTTATCTGCAGATTTAGTGGAGGTAAACCTGGCACAGCCTTACCTCTCCCCTTCCCCCAACCCCAGCACCACAGGGTCAATTTTTTTTTTCTCTATTGGCTCTAG
Seq C2 exon
GACTGTTACATCCTGGACCAGGGAGGCCTGAAGATCTTTGTGTGGAAGGGAAAAAATGCCAATGCCCAGGAGAGGAGCGGAGCCATGAACCAGGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(21.8=63.0)
A:
NA
C2:
PF0062617=Gelsolin=FE(41.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCTGATTCAGAAGGAAAAATGG
R:
CAAAGCCTGGTTCATGGCTCC
Band lengths:
178-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]