DreINT0036236 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:214426-214876:-
Coord C1 exon
chr11:214798-214876
Coord A exon
chr11:214525-214797
Coord C2 exon
chr11:214426-214524
Length
273 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
GGTTTGCTTTGTTTTTGGAGGAC
3' ss Score
-1.27
Exon sequences
Seq C1 exon
TGTGTCAGATGCCAACGGGACGATGCAGATCACCGAGATCGCAACCAGTCCACTAACCCAGGACCTGCTGAATCATGAC
Seq A exon
GTGAGTGCGCCCTCTCTGTTTCTCTCAGTCTAAACCATACATTTGCCAAAAGCCTAGTTCATGTGGTGTGTACCATCCGAATCAGAATGGAGATTTATTAAAGTTCAGATGGTCAACGCTGAGACGCAGTCAGCTGTATATCGAGAACAGAAATGACTGATCCAGAGTGACAAATGCAAAACTAAAATGAAGTGTAGCAGTGTTGTTGATGATGTGAGCATGCTCTGCAGTTGTCGGACTGTTTATTCACTGTGGTTTGCTTTGTTTTTGGAG
Seq C2 exon
GACTGCTACATCTTGGACCAGGGGGGCGTGTCCATCTTCGTGTGGAAGGGAAAGATGGCCAATAAGGCGGAGAGACAAGCAGCGATGACCCGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(20.8=59.3)
A:
NA
C2:
PF0062617=Gelsolin=FE(41.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAGATGCCAACGGGAC
R:
CTCGGGTCATCGCTGCTTG
Band lengths:
172-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]