RnoINT0024218 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70299795-70300078:+
Coord C1 exon
chr7:70299795-70299873
Coord A exon
chr7:70299874-70299979
Coord C2 exon
chr7:70299980-70300078
Length
106 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTTCTCCCTGCCTGATTCAGGAC
3' ss Score
9.8
Exon sequences
Seq C1 exon
TGTCTCCGACACAACTGGGCAGCTGTCGGTCACAGAAGTGGCAACAAGGCCCCTGGTCCAGGAGCTACTGAACCATGAT
Seq A exon
GTAAGTCGGCTGGAGGGGCTTTGCTTTAGGGATCCAGAAGTAACTTCAAAGGCAAGTCCTCTGTATCTTGAATTTGAGTGACCATACTTCTCCCTGCCTGATTCAG
Seq C2 exon
GACTGCTATATCCTGGACCAAAGTGGCACCAAGATCTACGTATGGAAAGGCAAAGGAGCCACCAAGGTGGAGAAACAGGCGGCCATGTCCAAAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(21.8=63.0)
A:
NA
C2:
PF0062617=Gelsolin=FE(41.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCGACACAACTGGGC
R:
CAGGGCTTTGGACATGGCC
Band lengths:
178-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]