MmuINT0172933 @ mm10
Intron Retention
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74421561-74421877:+
Coord C1 exon
chr1:74421561-74421639
Coord A exon
chr1:74421640-74421778
Coord C2 exon
chr1:74421779-74421877
Length
139 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTTTCTCTATTGGCTCCAGGAC
3' ss Score
8.72
Exon sequences
Seq C1 exon
TGTGTCTGACTCCGAAGGAAAACTGGTGGTTAGAGAAGTTGCTACTCGGCCACTCACACAAGACCTGCTCAAGCATGAG
Seq A exon
GTGAGAGGATCTGGAAGACCTCAAGCAAGGGGCATCTATAAGATGCTAAAGCAGACTTAGTGGGGGAAACTGGCACAGCCTAGCCCCACCCCCACCCCAGCACCACAGGCTAATTTTTTTTTTTCTCTATTGGCTCCAG
Seq C2 exon
GACTGTTACATCCTGGACCAGGGAGGCCTGAAGATCTTTGTGTGGAAGGGAAAAAATGCCAACGCTCAGGAGAGGAGCGGAGCCATGAGCCAGGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175:ENSMUST00000027366:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(21.8=63.0)
A:
NA
C2:
PF0062617=Gelsolin=FE(41.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGAAAACTGGTGGTTAGAGA
R:
CAAGGCCTGGCTCATGGC
Band lengths:
166-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types