BtaINT0025558 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73731426-73739476:-
Coord C1 exon
chr17:73739310-73739476
Coord A exon
chr17:73731531-73739309
Coord C2 exon
chr17:73731426-73731530
Length
7779 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TTTATCCTTTTGTCCTGCAGAGT
3' ss Score
11.29
Exon sequences
Seq C1 exon
ATGCGTTGTTCGGGACGCCACCGGGGTTCGGCTGTGCCTCGGATCGGGCGGAGGAGCCGCGCCGGCCCCAGGACGGGCTGCCCTACATCGATGACTCGCCCGCCTCCTCACCCCACCTCAGCAGCAAGGCCCGGGGTGGCAGGGACGCGGCGGAGCCCAGCAGAGCG
Seq A exon
GTGAGTCGGGGCGGGAGGGTGGGAGAGGGGGCCGCCGAGGGTCCAGTCTCCCTGAGGCCCTCGTCCCGGATCTGGGTGCATGGGGCGGGGGGGGCGGGCGTGGAGGGCGGACGCGGGGGTCCCGGGGGGCGGAGGGCAGACGCGAGGGTCCCGGGGCTCTGTCTCGGCCGGCAGGGTGCACGGCAGGTCGGGTCCAGGCCCCCCCCCCAGCACACTAGCCCCCACTCTTGCCCAAGGAGCTGCTGAGATGGCTCACCCGCTCTCTGGGGTCTTTCTCTGGGGGCCTGCCCATCTTTAGTGACCCTCCCGCCATCCCCTCTGCTCTGTGATGGAACTGAGGCCCCGAGATCCGTGGCGAGTGGAAGCTGGCACCACCCTAGTGCCCTCCCTCGCGGGCAGTGGCCGTGAAGGCCTGACTCCCGGTCCTCGTGGCCTCACGCCTCAGGCCGGCGCCCCCAAGGGGCGTCAGGGCCCGGCCGGGCACCTGCTTGACCTCCCAGGCCCACCCTGCTGGGCTGAGCGCGGGTGTTGCCCCCGATGACCGACACCTCCCTCCTCCCACTCAGCTTGTTTCTGGGGCGTCTCCACCCCGGATTTAGCAATGAGAGCGAGGGCTGAGGTTTCCCCCGTGGCTGGGACCACATCTCCTCACCACATGGCCCCCCTGTGGGGCCGGCGCCTTCACTCAGGACTGCCGTTTTCCTTTGGCTTCTGTGATTTCTGGCTTCCCTGCTGGCCTAGACGGTAAAAACATCTGCCTGCAGTGCAGGAGACCTGGGTTCAGTCCCTGGGTCGGGAAGCTTCCCCTGGAGACGGGAAATGGCCACGCGTTCCAGGATTCTTGCCTGGAGAATCCCACAGGTGGGGGAGTCTGGCGGACTGCGGTCCGTGGGGTCGCAAAAGAGTCCAGACGTGATTGAACCACTGACACTTTGGCTTTCCCCCTGCCGGGCAGGCTTCTCCCCCTGAAACGGGGGCGGTAGGTGGGCGCCCGTGTGAACGCATGCCTGCCTGGTGCGGCTTACCCACACGGCCAGCCCCGGCGTTCCGTAGACGAAGAGACCGAGGTTCAGAGGGGCAGAGTGACTTACTCGAGGCCACACCGTGGCGGCTCTGAAGCCTTCCCCGCCCTCAGCTCAGCCATTCAGCCCCTGCCCTGCCCTTCGTGAGGTCTCCTCTCTCACCCTGCCTTGCGGGTGTGACTTGGGACAGACGAGCATCCTAACGGCCGATCCCTGGACTCGGGACGGTCCTCCCTGTCTGTCTGTGGTCCCGGAGGGCTGTCTTCCCCTGGCACGTGACCTCCCGCCCCTGCCCGGGCCCCTGCCCTCAGGCCCCCGGCACGCTGACTTGGGGTTGTGCCCCCCACCATTTACCCCCAGTTGGGGGCCCACCTGCTGGGGAGCCTGTCCAGACCAGGAGCCCTCAGACTCATCTCGCCTTACACGCACGGCGAGAGGGCTGCACCTGCTTGTCGGGCCTGGGGGCTCCAGCCCCAAGCGGGCACCTGGCCCAGGGGGCTTTCAGGAGGCACCTGGGGGAGATGGGGACGGGACCGGATGAGGCATGCGTGGTTTTGTTCCGGAAGCCCCGTGGTCCAGGGCTCGAGGCCCCGGAGACCGGCAGAGAGCTCTGGCTTTCTGGGGCCCTGTTGGCCACGCAGGGACACTTCCCTCTTTCGTCTCTGATTGTGGGTCTGAGGACGATGCGGCTGGGGCTTCCTGGCGCCCACAGGAAGCGCTGTGGTCTTGCGGTCGCCCGATCCTCCATCTGCCAGGGCCAGGGTGCCTGCCCGTTCCCCTCAATCCCGCCCCTCCAGGGTGGGGGCCGCCGAGCCTGGGCCCTTTCAGGGTGGCGGGTAGTGGGGGGTCAGGAGGACCTTCCTGGGGACCCATGGCGATGCGGGGGTTCGCTGGCCTACTGGGGGTGCAGGTCAGCTCCAGGAACACATGCCCGCAGGGTGAGTAGGGGTTCCCGGGGAGTTGCCCGGGGCACTGGGGGAGGAGCCAGGTGGGCAGTAGGGTGGGTCCTGTGACCCGAGGAGGCTGTCCCGGCGCAGAGCATCAGTGAGCACCTCCCTCCCGGTGCTCATCCTCAGAGGGGCCGCTGGGCGTGTCTGCGTTTCCCTGGAACGACGACTGTGCAGTGCCAGCTGGGGACCCAAGTCCCGGGCGAGTGCCAGTGGACACACGTCCCTCGTCTCCGCGAGGCCCCAGCGAGGTTACGCGTTCGTCAGCCCCTCGAGCAGGCTCCCGGGGAGCCCGGACCAGGGCCTCCGGCCAGCGCGTCCGGGGTGCAGACGAGCGTCCAGGCGTCACCCCAGCTGCCGTCCTGGGAGGGGGTAGCCTTTGTTCTCGCATAAAGAGCTGGCCAGCAGGCCGTGACTGCCCCGGGGTTGCCGTTGAGGGGCCCTGCAGCTCTGGGCCTGGCAGCTGGCTGGCGGGCTGCCCCTCTGCTCCCCTGGCTCCCTCCCTCCGCTCCCCGACCTTGTTGTCACACTGGGGGTGGTTTTTTTTTTTTGCTTTCTTGGCCACAGGGCTTGTGTTGTCTTCCCCTCCCGCTCCCGGGCAGTGGAGGCCTCTTTCCTCCAGCTTCCTCCTGCCCTCTCCGCGTCCCGGGCGCCTGCACACACCCTTCCCAGAGCCTGCGCGTGTGCAGAGCAGGTGTGAACACCGCAGTCCCGCCCTGCCCTTTGCGCCCTCCGCCTGTCCCCTCCGCCCTCTCGCCTCTGGGTGGGGTAGCCGGTGCCCAGGCCCCTGTCCGCTGCCCCCTAGCCCCTCTGAGGCTCAGGAGAAGGTTCTAGTCTAGCCCTGGGCCTCGCTCACACGTTCCTTTACCCGGCCAGGCCCCTGGGAGCAGAGAGCAGGATGGGGCGCCGTCCTTTTCCACCCGGCTCTCCAGGCCGCAGGGCTGGGGAGCAGCTCCCCCGGGCACACAAGCCTTCACCCCGGCCATGGCGGGAGGTGCGAGCAGGGTCCCCTGGGAGCAGCTTCCCCAGGGTGCCTCCATTCGAGACATGACCTCCGTGGTCTGAGAGGAGAGGGGGTGGCTGGGCCCCCCCACCTGCACATCTCTGCTGATGGTGCTGGGGGCCCCGGAGCCGGCTGCCCGGACGGTCCTGGACCCCGGGACCTGCTCATCTGATGGACGAGGGTTCCCTGGAGGGACCTTTGCACCTTCGTGAAGGTGTGGCCACGCCAGGGCCCAGCCCGCGGTTCTGGGTCCTCTCACTGGTCGGTTTATTCCGTGGATCTTGGTGGAGAACCTGGGGCTCTGGGCGCCCTGGCCCGGAGGCTCCCGCTGCCCAGCATGGCCTGGACAGGGCTGTGGTGTGGGGCCTGGGTGTCCTTTCCCCAGAGTGGCTGAAAGCCAAGAATCCGATGGCTACCCCCCATACGTGTACACAGACACAGACAGGAACACGCATGAGCATGCGGGCTTTCAGGAGGCACCTGGGGGAGACGTATATGTGCGCGCGCGCATGAACACACACATGAGCGCAGACGTGTACACACGCATGAGTGCACGCACACACATACACGTGCATGTACACAGGAGCGCACATGTACATGTACACACAAGCACACGTATGCATGCTTGAGCACACGTGTACGTACACAAGCACGCACATGCATGCTTGAACACACGTGTACATATACAAGCACACACGTGCGTGTACGCACGAGACACACACACACGAGCACCTGGCTTGTGCACACACAGCGATGCCCAGAGCAGAGTGGTGGTCCAGGCAGCCTTTCTGGGTGGTCCCAGCGGGCAGCCAGGATGCGCTGTAAGTCCCAAGGATGCAGAAAGCAGACACGGGGGCAAGTGGGAGCTGGGCTCCTTTTCTCCAGTTCGCACCTGGGCAGCCAAGGCTCAGGGCAGGAGGGCAGGGGCCTGAGACAGTGGGGCTCGCGGGGCGGGCCTGGCTGATGGCCGCACCCCGACCCCGTGGCTCAGCCCCGGTGCTTCCTGTCAGATCTGCCATTTCTCCACCACGAAGTACCTCCCTCCCGCCAGGCCAGGCAGGTGGGAAGGGCCAGTGGGGCTGGGGGTACAGAGGGGCTGCCCTGGGAGGTCCTGTTCCAGGTATTATGGAAACACACAATGGCGCTCATCTCACAGGCCACCAAGACGATGCTCAAAATCCTTCAAGTCCCAACAGTGGGTGAACTGAGAACTCCCAGATGCTCAGCCTGGATCTAGGAAAGGTGGAGGAACCAGAGATCAAACTGCCAGCATCCGTCAGATCATAGAAAAAGCAAGGGAGTTCCAGAAAAACATCTACTTCTACTTTATGGGCTATGCTAAAGCCTTTGACTGTGTGGATCACACACACTGGAAAATTCATAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCCTGAGAAATCTGTATGCAGGTCTGGAAGCAACAATTAGAACTGGACATGGAACAACAGACTGGTTCCAAATTGGAAAGGAGTACGTCAAGGCTATTTATTGTCACCCTGCTTATTAAACTTATATGCAGAGTACATCATGAGAACCGCTGGGCCGGAAGAAGCACAAGCTGGAATCAAGACTATTGGGAAAAATACCAGTAATCTCAGATACATAGATGACACCACCTCTGGCAGAAAGTGAAGAGGAACTAAAGAGCCTCTTGCTAAAGGTGAGAGGAGAGTGAAAAAGCTGGCTTAAAACTCATCATTCAGAAAACTAATATCATGGCATCTGGTCCCATCACTTCATGGCAAATCAATGGGGAAACAATGGAAATAGACACTTTATTTCTTGGGCTCCAAAATCACTGCACATGGTGACTGCAGCTATGAAATTAAAAGACCCTTGTTCCTTGGAAGAGAAGCTGTGACCAACCTAGACAGCATATTAAAAAGCAGAGACGTTACTTTGCCAACAAAGGCCCGTATAGTCCAAGCTATGGTTTTTCCAGTAGTCAGGTACAGATGGTGAGAGTTGGATCCTAAAGATGGCTGAGCATTGAAAAATTGCTGCTTTCAAATTGTGGTACTGGAGAAGACTCGAGAGTCCCTTGGACAGCAGGAAGATCAAACCAGGCTCTCCTGGCGTGTCAGTGATAAAGGAACTGCGTGCCAACATTGGAGACGTGGGTTTCATCCCTGGTCCACGAAGATCCCTCATGCCTCGAAGCAGCTAAGCCCTGGCACCACAAGTGTGCAGCGTGTGCTCTGGAGCCCGGGAGCCAGAACTGCTGAGCTCACGGCTGCGGCTCCTGAAGCCCCTGCTCGGCGACAAGAGAAGCCACTGCCGTGAGAAGCCCGAGCACAACTAGAGACTCGGAGCCCCTGCTCGCGACAGCTAGAGAAGAGCCCGCACAGCAACGAAGACCCAGCACAGCCAGGAATAAATGAACAAGTGAAATTATAACAACAGAAAAAGGAGATCAAACCAATCCATCCAAAAGGAAATCAGCCCTGAATGTTCACTGGAAGGACTGATGCTGAAGCGGAAGCCCCAGTACCTTGGCCACCTGATGCGAAGAACTGACTCACTGGAAAAGACCCTGATGCTGGGAAAGATTACGGGCAGGAGGAGAAGGGGACAACAGAGGATGAGATGGTTGGATGGCATCACCGACTCGATGGACGTGAGTTTGAGTAAGCTCCAGGAGTTGGTGACAGACAGGGAGGCCTGGCGTGCTGCAGTCCATGGGGTCACAAAGAGCTGGACATGCCTGAACAACGACGGGAGTGCCAGGAGGCCCGCGCTGGCGTGGGATGATGGGTGACGACGCCCACGGACGTTAGCCCTGTGGTAACCGGGGGCAGGGGTCTTGCTGCTGGTGAAGTGAACGGAGCCCAGAAGTGCCGCCTGACGCTCAGTGTGGCACAGGGTGCCCCCCTGGCACCCAGCAGAGAACCCTGCAGCCCCAGATGTCACCCAGCAGAGAACCCTGCAGCCCCAGATGTCAGCGGGGCCATGGCCGGGACCTGCCCCGTCCGTCACGTCCCCACGAGTGACCAACGGCCAGTGCTCCGCTTCCACACCCAAGGACAGGGCTGTCTCTGCTCACCTGCAGGCTGGGGAGCCAGTGGCGGAAAGGGCAGGGCTGTGTCCTCTTCTCTGGACACAGGGACACAGGGCCTCAGGCCCCTGGCACCACCCTTGGGCTGCAGTGGGGCCGGCCAGCACAGGCTGGACGTAGGGAGGAAAACCCCAGCCAGGTGGGGCGCAGGCCTTGGGCACAGCCACCCTGACCCCAGACTGCCTCACTGCCGGTCAGGGAGCAGGCAGAGGACCTCAGCCCGGAAGTTGATGAAGAAGCAGTTTGGTTGCCTTGGGAATCATGCTCCGTGTCAGTTTCCGGGCATCTGTAATAAACCACTACAGACCGTGTGGCTTAAACAAGAGAGACTGATTTCCGCCCGTTCTGGAGGCGGGACGTCTGAGGTGAAGGTGTCGGGGGCTGGTTTCTCCCGGGACCTCTCTCCTCAGCTCAGAGATGCCCGTCTTCCCCCTGCGTCTTTCCGGCCGGGTATGTCCGTGTCCTAATCCCCTCCTCCTCGTCTTCTCGAGGCGTCGATTTATAACTAGGTGTTTATCCTAGGTGTACAAGGCAGTGGTTGGGTATATGTGTATATTGTAAAACGATTGCTGGCCATGACTCAACATCCGTCCCCACGCCTGGTTATAAATGTTTTGTGTGCTAAGAACTCTTAAGATCTGTTCTTTGAGCAACTTTCACATGTATGACATGGTACTGACTGTGGCAACCCGCTCAGAGGGGAGGTCCGTGGGCAGAGGAGCCTGGTGGGCTGCAGTCCCTGGGGTCGCAGAGGCGGCCACACCCGAGCGGCAACACACGGTCACCGAGCTGTTCCGTACATCCCCAAGACTTGCTTGGCTCGTTCCTGGAAGTCTGTGCCTTTTGATCACCTGATCTCTTCTTAGAAGGGCGTACCAGCCGTTTGGGACTAGGACCCAGCCCACTGACCTCGTGTTAACTTGATTACGTCTCTAAAGACCCTTATCTCCGAGGACAGTCGCGTTCTGGGGCGCCGGGGACACATCCCTGGCGTGACACCGTCACACCCAGTGCGGCAGTGTCGTCTTGCAGCCTCCAAACCCGGCCCCCCTTGTCTGCATCCAGGGCCCTGCCAGCTCTGTGTTTGAGGCAAAGACCTCAGAGTGGGGAGGAGGGGGTCCTTGCTGTAGCCTACAGGTATGTGGGTCCCAGTGTCTAGAAAGCAGGCTCAGAACAGCAGGTTTAAGGGACAAAGGCCCTGGACCCAGGAGACGGGGTTTCCCTTGGGCAGGTGGCGTCAGCCCAGCCTCGCCCTGTGACTGGGCACGAGGCGGGCTGCCCAGCCCTGGCCGGTCCAGAGGTCCAGTGAGGCTGGCTGGGCAGGTGCCGGGCGAGGGAGTATTGTAGCGGAGAGGCCGCGGCGGCCGTGTGCTGGGCCCGATGCCCCTCCCCCCCACCCCCTGGGCTCAACTCCTCTGGTCACGGGTTCAAGGTTCGTAGGAAGGCTTCGCCTGCCGCTCCACCCAGCTCCCCACTGCCCGTTGCCTGGCGTCAAGGCCAAGGGTGGCCCCCGGCTTTGCTGGATGACTGGCCAGATGTTGCAAGGACTGGAAACCGGGGGCTGACCTGCGGGGGGGCCCCAGGCCTCCCGAGTCTCATCCCACCCAGAACCTTCTCGGGAAGCTGATCTTCAGGGCCACTCTCCGGCTTCCTCCACCTCGACAGCTCTCCCCGCCACCCCCACCCGCCCCCTCGGGCCTGACGTTTATCCTTTTGTCCTGCAG
Seq C2 exon
AGTGAGCTGGACTTGGAAAAGGGCTCAGAGATGAGAAAATGGGTCCTGTCTGGCATCCTGGCTAGCGAGGAGACTTACCTGAGCCATCTGGAGGCGCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566:ENSBTAT00000029392:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062115=RhoGEF=PU(10.6=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development