RnoINT0025277 @ rn6
Intron Retention
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14474939-14480993:-
Coord C1 exon
chr20:14480821-14480993
Coord A exon
chr20:14475044-14480820
Coord C2 exon
chr20:14474939-14475043
Length
5777 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TCTCTGCTTCTGTCCTGCAGAGT
3' ss Score
11.1
Exon sequences
Seq C1 exon
ATTCCTCGTTTGGAACACCACCTGGATATGGCTGTGCTGCAGACCAGGCTGAGGAACAGCGCCGGCACCAGGACGGGCTGCCCTACATCGATGATTCACCTTCCTCCTCGCCACACCTCAGCAGCAAAGGCAGGGGCAGCCCAGCCTCAGGCGCCCTGGAGCCCACCAAAGCG
Seq A exon
GTGAGTCCGAGAGGCACACCTGCCAGACGTAGGGGGTAGACGTGAAGTCCGGATGGGTACTGGGCTCTGCTCGGGACCAGGCCACCGCTTCCATGGAGGAGGCCATGTCCTGAAAGGCAACTAACTCCTTGTCCGGGGACACAACAGCAATTAGGTGATGGTACCATTATAGAATCATAGAGAGCTCCTTTCTTGTCGTGAATCGGGAAGCAACCCTCCCTCTGCGTACACTTCACAGGGAGGCCACGGGCTTCTTTATAAACTGAGCCTAGAGAGGGAGGATGCATGCGTTTGTAAGGCCGAGAAGAGCCATGCCAGAGGCCACCACCTGAGCAAGCAGGACTTACGTGAAAGTCCCCACTGGAGTGCTCAGCTACATTAGGCCGGCCCTGACCCTCCGCTCAAGGGATAGACTCACTCTCTTTTCCACAGAGAAGGTCCTCACAGTAGCTTCGTTTGACCAAGATCCTTCCAGAGAGTTTGCACTTGACCCTCACCAACAGTCCCAGGGAACTTATCTTGCTGTCATCTCCACGTCACCGAAGTATAAACGATGTCAGTTGCTGGCTTCCTCTCAGGTCACGTGGCTAACAAGTTGTGGAATATTTGAGAGGCCATCTGCCACATCCCCACGTAGCATACTGTATGGGCCAGCCTTCTCTCCCGGGAACATCACCCCGAGGCACTTGCAGACTTCACAGAGCAGTTCCCACAGTGAATCTGCCCAGCCAGCACGGTGTCCTGAGCCACTCTGTGGTCCCATGGGCTGGGGCACTGTTGAAGATAACTTTTTCAGTGGAGGGAGGGGACACCTCCCGGGATGATTTTAATGGCCAGTTTGACACAGTGAAAATGTCTCAATGGGGACTTTCTAGATTAGGATAGTCTGAGGGATTTATCGAAACTATGTTCGTTCATGTGGGAGGACCTGCTCGCCATGGGCAGCATTATTCCCCAGGCTCGGTATCCTACGGAGAAAGCGAGTGGAGCGCCATCATACACACATTGATTTGTTCTCTCTACCCATGACTCTGAATGTAATATGACTGACTAGCTACCTCACACTCCTGCCACCTTAACTCCCACACAGTGATAGACTGTGATCTCCAGCACATAAGCACTTTATCCCATAACCCGTGCATGGGTACACATGGGTGTGCATGGGTGCATGCATGCGTGTTTGTGTAGTAAGTGCCATCAGGATTTTTCTTTATAAATCACAGCAACAGGAAACAGCTAAGACAGGTCTTCCTCTGACTCCTTGGATTCTCCCTTCATGGAGTTGAGCATGAAGTTTCTCCTAAAGCAGTTTCTCCTTGCCTTTGGCCATTTTGTCTTCCTGGGCCCTTGGCATCTTCTCCCTTCCGCTTACCTTGTGTTTGAGAGTGGGTCTTAGGGGTGTGGCTCAGTCTGTAGAGTTCGTGTTCAACGTGCACATGACCCTGGCTTCCAACCCCAGCACCACATTCCCCACCTTCGCTGTAACAAAGACCTAGAAATGTGTCTTTTCACTCAGGTCCCTTTGCTGACACATGTGGCTTACATCTCTGTCCATCCATCTCCCGAGAGCTGCCACCACCCACCCAAGCCTTAATGTTCCTTCTTGACCCTTGAGAGCAAGTTGACCTACTTCTTTGATTCAGGCCCGGTACAGGTTGGCCTCTGTTCTGCTGGCCTCCCGGCACAGATGGTGGCCTTTTAGCACCCATCTCATCCCTGTAGACTCCGTGCAGAGCCTTGTCTCCCTTCTCCTGCCCTGCTTAGGGGTTTATCAAACATGCCTCCCGTGGCAGGATATTGCACATCTGCACAAACAGGTATACAGCGTCCCCTCCCTCACCAGGCATTCCACCAGAGGAGGTGGCAGGGGGGTTCTAAATGAGGAGGGTTGACATGTCACCTAGTTTTGTCCCGGCAGCTCCTGCTTAGATGCTTATTTTAGTGCTTAGAGCCCTAAGGGTAGAATTCCATCCTGGCTCTGGTGACCGACACACCCTTGGCTTCCTGATGTCTCTTAGGTTCCTTAGGGAATGTGGTGGGTTTGGGGCCAGAAACACCCTACCCTGCTGCCTAAGGTTCTTCTGCCTCCCAAATCCTGGTTTGCTCCCTGCTGCCAACCTGGTACCTTTTGGACCGGTTGAACATTAAGAGAAATTTCCCTGGGGATTCCATGGCAACACACAAGCTCAGTGCAGCTTCTGATCTCAGGGCTTCTCAGTCAGCATCTTCCCCAAGGAGTTAGGTATTGCATTGGGGTGGGGCAGAGGCCTGGCACCCCTTACTGCGGCAGCAGCGAGAAGGCCTGAGGTGGGTTTGTTGACACAGTATCTAGTAACAGAGCCAGCTCTGAGTGCTGGGATCTCCCCTTCTGGAGGACTGGTTTGCCCTTGCAAGCTGGGCTCTAGGGCAGTTTCTAGCCTCTAACTTAGAGAGCCCTGGCCCTATTTAAACTAGAAGAGGACACCCTCTGGTCAGCAGCTGTGCTGACTATGAACTTACAGTAGAGAAAGCTGCACCCTGATTGATCAGTGAGCTCCCCTGGGAAGAGTCTTGAAAGACCTACTAATAGACCAGCGGCAGCTCACCTGTGGGCTAGGTAACCTTTGTTACTTTGTTACCAAGAGTCTAGTTTGTTTCTTTCCATTCCTGGTTGCCTGTCTCTGGACTCCTGAGGGCTTTTCCCTACCTCTATGTCAGCCTCCAGCTGCCCTTTACCCGAAGCTTCCTCCTAGAAGGGACCTCCCTGCCTGTAGGACCCTGATTACAGGAATGCCGCGTGTACAGCTTCAGTTATAAACAGCCAGTGACAGCCCTGTCCCCTGCTCACTTCTCTCTTGCTGCTTGTGGGATACCATCAGCTCTGTTCTGATCCCCAAAAGATTCTCCATCTAAGAAGATTCCTCTTCTCCAGTCCTGTCTCCATCCACCCCAGCACCATCCCTGGGCCAGGTGGCCTCACCCTTGGAATGAAGAGAACTGGACTTGGCGCCATCTGCTTACACACACAGTGTTTCCTCCTGGCTTTCCAAACGGTGTGGGTGGGATGAGGCATGGTTCTTCCACCAGGCACTCCCATCTATGCAGGCAGCAGTGTCTTATGCTGGGCAGGGACGTCACTGGCCCTGCTGACCTCCCTGCACCCCACTGTCTCCCTGGAGCTCACAGTAGCAAGATTGTTCTTCGAAACTAAGGAGGAGGACTGCATGTTGGGGGTGGCTGTCACTGTCAAAGGCCTGCCATCTCCCTAACCCCTTCCCTGTGTGGGATAGGAGTATCATCTAGTCACAGTGGAAGGCATGTGCAGAGAGAGATGGAGGCCGCTTCTCTGATGACCTGCCATTACACTGGGCCGAGAAGTGAGCATCACTCCATCAGATCCTGAGTACCTGCCTTTGACGAGCTCAGCTGACAGTCCTGGATTTCTGGGACCTGCTTGCTTCCCAATTAGATCACTGAGACTCTGAAAGAACCCTCGGGGTTTCATAAAGATGAGGCCCCAACTAGGACCTAGCCAGGCCTTTGAGATTCGATGAATGAAATGAATCTTAATTGGGCACTGTGTTCCAAGCACGGGAAGTTTCGAGTTCAGACACAGCTATGCCCTGGAGGCTCCTATCTGTGGAAGCCACCGTCTGGTCTTACCTGCAGGGACCCATTTGGGTGGGTTATTTCCCCAGAGTGATGGCTGCCACCCACACACATTTGCATGGTCACAGCTTAGGCACGCCACACATACACACACACACACACACACACACACACACACACGTCATGTGGCAGTGACAATGAGGTTCAAGCCCCAGGGATCCAGGTAGGATACAAGAATTAGACAGTTTATATCTAGAAGATAAAGGCCCATGCAGAGGCTCCCTGGTAACCCTAGCTCTAAACTCTGACCCTGAATCCTGACCCTGGGCTCTTCTTGATTAACCTGCAGTCTATACCATGACAGACTTCCCTGAAAAGGACCAGCAGAGTCATTAAGACACAGGGAGTCCATAGCGGGGTCCTAATGTCCAACTGCAAGGCTCCCTGAAGCCTGAGCTGTCCTCAGTCAGGTCCTTCCGTAAGCCCAGTCAGTCTCACCCCGGGTCATACAGGTCCTATCCAGAGACCTTTGCATGAAGTAGCGACCAGGGATGTGGCGAAGCATCATATGGTATGGGATTGCCTGCCGGCCCCCAGGAAGGAACCCCTCAGCTCTACATGTCAGCATCGATCACACTTCTCCTCTAATGATTTAGGAAAATGAGTCATGGAGGGAGGTGGGGGTGGAGTCAACAGTCCTGTTTTAGTCCCAGGAGGTGGGGCAACACGGCTGTTTAGAGTCGGCTCTTGGCGCTAGGAAACTGGAAGAGGGAGTGGGCGGGGCTTTTTAACCCTCCGTGGATGCGGGCTCCGCCCCTTACTGGCATCCGCCTCTGCCTGTAGGTGGGGCAGGTTGGCCAGGTGCCACACAGTGGTTGATTCCACGGGCACGGCCAACCTCTGACATCACCTGTGGCTGGGGAGAGAAGCAAGGAGTGGCCAGGAAACCAGGCAGCACTTTCTGTTGCCTTTGGCACCACCACCGCTGGACGGCTAGGCGTGCCATAACAAAAGCACCCCAAGCGGTGGCCTTTAAACATCAGGAGTGCGAAGTGCGCTTTCTCAGCGGTGTCAGGGGACGGAAGGCTGAGGTCCAGTTGCTGCTGAGGTGTTTTCTTCTGAGTGTTCTCTCCTGAATCTATGAGTGGATGGCTGTACATAACTCCTCTTGGATCAAATGTCTTCTCTGTGTGACAGACCCATAGTCCAGTCCTTATGGACTGCTAGTTATACTGACCTAGAATCCGCCCCACTGTCTTCATTTCAACTTCTCAAATCCAGCCACATCCCCAGCCTGTGGGACTCAGGACTTCAATGCAGGAATGGGGGGCATGACATGGGTGCAGTCAGTCTATAGTGCCATCATAACCTGGCATCGGCCCATGGTCTCCCAGGTCGTGCAGGCTGTGCCCCCCCCCCCCCATGTCAACATGCTGCAACATGTGTGTCCGTTCTGTCTTGATGGAGACAAAATCAGCAGAGCTTCACTGTTTTGATCTGGGAAGTTGACGGGCTGAGGTACTTTGCCCAGAATCTGCTTGCGAGAGAGTCCCTCCTACCAGCAAGAGAAAGCAGGATCAGACAAAAGCCCTAAGCCTGAAGGCCACCCTACCCTCAGAGGCAGGAGGACTATGACACACAGCTGCAGCGGTCACAGTCACAGGAAGGGCAGCTTGCTGAGGGAGGAGGTGGTGCTACCTAGAGGCCTGGTTGGTCCAAGGTCCATGTGGTAGTGACAGCCAGGGAATCCTGGTGAGGCACACATCAGGCAAAGGGCAAGGAGCAGTAGACATATTCCAAATAGCAGGAGTCTGGATGGCAGGCAGTAGGCTCTGATATACCCCTTCTCAGCCCTCCTGGAGCAGCTACCTTTGGGCTTCCCGTGGGCTACGCCCACCTTGGGTCAGAGCCTCCTTTCCCTTTCATGTGTGGATCAAGGCAGCTACTCCTTGGTCCCAGGCACAAGGCAAGAAGGAGAGGAGGCCTTGTGGTCTGCTCAGCGTCCTCGTTTCCTACTTTGTGGGGGCCGCAGGTGACCCTCGACTGGATGAGCCTCTGGAATTTAGTGACTTCAAGCGCATGGCCAAATGGGTACCAAGGCTATCGGTACCTCCCTCTTCCTTCCTGGTGGACCGTCTCTGAGGGCTTTGTCCTCAGAGGGAGCTGATGTCTCTGCTTCTGTCCTGCAG
Seq C2 exon
AGTGAGCTGGATTTGGAAAAGGGCTTGGAGATGAGGAAGTGGGTTTTGTCCGGAATCCTGGCCAGCGAGGAGACATACCTGAGCCATCTGGAGGCCCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304:ENSRNOT00000001766:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062115=RhoGEF=PU(10.6=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]