BtaINT0025564 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73716548-73719653:-
Coord C1 exon
chr17:73719513-73719653
Coord A exon
chr17:73716670-73719512
Coord C2 exon
chr17:73716548-73716669
Length
2843 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCCTCTCGCCCTGCCCACAGCAC
3' ss Score
10.18
Exon sequences
Seq C1 exon
GACTTGCTGAAACACACGCCCCCCAGCCACCCTGACCACCCGCTGCTGCAGGACGCCCTCCGCATCTCGCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGGCAGTCCATGACCGTGAAGAAGGGAGAG
Seq A exon
GTGAGTGCAGTGGCCACTGCCCCGGTGGGGGACACCGGGCCCCACTGTGTCCCTGCAGCTCAGCACAGCAGAGACGCCTGACCCTGGGGGCCCTTGACCCTGGCAGGGTGGACCCCGGCCGGCGGGCGGGGCGTCCAGGTGGGGTTGCAGGGATGTGGTGGCCTTGCTGCGGGGGTTGTGTCCAGAGCCCCCCACACTTCTGCTGGATCGGGGTCCCAGAGGTGGGCCAGAAGGCAGACGGCATTTGTCTGCCTGGAGACCGCTCCGTGCTCCCCTGGGTGTTCTTTCACAATGAGACGGTTGACAGCGGGTTTAAGGACTTCCCGGGCAAGAAAGGGAGCGGGGCGTGGTATGTTCGTAGCTGAGAACGGGGTTGACGTCCTCTGGGGGGTTCCCCTTCCCCTCCTCTCCCCCCGCCACACCGAGAGCCCCTCTTGCCCTCCGTTGTCCCTGGAGGCGAGAGTGTGGCGCAGAGGAGCAAGGTGCCGCCCTGGCTGCCTCCACCCTTCCCGGGAGGGGCCCGCCCGTGCCAGGCAGCTTGCAGTAAGATGGCAGAGGTGTGCCAGTCAGGGGGTGGCGTCCAGCGTGAGCACCCTTTGCTGGACATGTGCCGGGGTGGGAGCAGGCAGGGACGGGGCATGTGGGCTGGGCGGTGAACCTGACCGTCGCCACTGCTGGGAGCCGCTTCCTCCCCTTCCTGCTCCTTTGAGTCCCCCAGGCTCGGTGGTGCCCAGTCTGACCCGCCGGGCACTCGGGGCAGCCAGCAAGTGGCTCTCGGCCCGAAGCTCCTAATCTCTGGGGGAAGTCGTGCATGCGTGCCCAGCCTCCCTGGTCACAAGTTCACGTGACCTCAGCAGACATGAGAGTTGCTTCCGCCAAGACAGCCTTGCCATGGCTGTCTCCCCTCCTGGGAAGCGGCTTCAGGGTACGTCGAGTCTGTGCCGTGCCTCCCGCTGCAGCGGGCATCCCCGAGGAGACGAGCCTTCCTGCTCCTTCGATCACTGGAAGCAGCTGCCTTTGGTCAGGTGTCGCCTGCAGCCGGCAGTCTGGCCCTTGTTCCTGGGTCTCCAGTCACGGCCTCCTTCCGCGGGGACCACGGCTGGGGGACGGTCCGCCTCTGAGCTAGAGGTTGGGCGCCCTCTGCTGGCGACGTCCAGTAGCTGAGCCCGTTCGGGTCCCCCTCCAACTCACAGAAGGTCCCCCGGTCTTGCCTCCTGGGCTGGAGAACCTTCTGCCGAGTCCCTGCCGAGGGGACATCGCCCCGTTTGTCCCTCGAGGACTTCAGCATCTGGGACCTGCACACACCCGGCCGTCAGATGCCCATACCCCCACACCACCCCCCGGGGGCACAGGTGGGCGGAGGGCGGTGACCCCATGTCGTGGCTTGGCTCGCAGGCAGCCCTCCCGCCCTTGCACATACGGTGCGGTCGGCATGGGCAGTGCCCGTGTGAACCATCCGCGCTCTGTGCCAGGGCCTGGCGGGCTGCTGTGAGCCCACCCGAATGTGATGGTGACATGGGTGTTGGGGGGGGGGGGGGCCAGCCCAGGCTGCACTCGCTTCTGGGGGGGCTCTGGCTGAGCGTTGGCAGGGGGTTCAGAGAGGCACAGCCTCCCCAAGAAGAATCTAGGGTACGGGTGCCCGGACCTGCTGGGGGGCTGTGGTGAGGCGGCTCTGGAGTTCTGCATGATGAGCGGGCCTGACACTCTGCACCGCCCCACACCCGCCCCAGCCATTGCAGACTTGGGGGGAGGCGTTGTGCTTTCTGAGGGGCCTTCCCTGAGGCTGGGTGAGCAGGGTCCCTCTCCTCCTGGGCACAGAGCCCTGAGTCCCTGCTTGCTTTCTGCACTGGCGGGGGTGGGTGGCGGAGCTCTCTGTCTGTAAAATGGGCACAAGGACCCTCCCCCAGGGTGTGGTGGGGCAGCCTCTCCGCCTGTCCTCCGCACGGCACAGCCTTGGTCCAGGTGACGAGGTGGTGGCCGCTGGTTGTCGGCTGGCGACCGACCTACCACCCCACGCCCTGGACCTGTGCGAGCTAGGGACACCCGCCCCTCTGTTTCAGGGAAGCCGCCGGGGCAGAGGCGCAGGGCTTGCCGGGGCACCGGTGCCTCGAGTCCGCCTGCTGTTCAAGGCCTCCTTGGGGCTCGGGGCCTGCATTAGACACGTGACCCCTGTGTGGGCTTCTGTCCATCAGCGGGCTGTGACCTGAGAAGGACTGGAATGCAGGGTCCCAATTGGGGGACCCCTGCCCGGCCTTCTGATGCCCGCAAATCCGGGCCTGGCCTTGAGCGTGACCGCCCCCCTCTCTGAGTCCTCCCGGCCCTGCCCCACCCCACTCACCAGGCGGCTGTCCGCCCTCAGCAACGGGCCCTTCTTGCTGGTCCCCCACACGAGATTGTCCCCTCTTCTGGCCTGCCTCCCGCCCGGGTGTCCAGGGCTGTCCTGGGGAGGGAGGCCCGGGCCGCCCTTGCTCAGACGGGCTCTCCAACCCCCGGGCTGCGCCGTGCCCTCCGGCCTCTACGCCGGCGGCCGAGACCCTGTCCACGCATCCTCCCCCATAGGCCGTGTGCCCCGGGCGCTTGGGGACTTTAATGGACAGAGGGCAAGGGGTTTGAGGTGTTTGCAGGCGGAGGGGGCGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTGCCCACGCCCCCTCGCCCTGACCACGCCCCCCTCCTCCTGACCACGCCCCTCTCGCCCTGACCACGCCCCCTCGCCCTGACCACGCCCCTCTCGCCCTGCCCACAG
Seq C2 exon
CACCGGCAGCTGCTCAAGGACAGCTTCATGGTGGAGCTGGTGGAGGGGGCCCGCAAGCTGCGGCACGTCTTCCTCTTCACAGACCTGCTGCTCTGCACCAAGCTCAAGAAGCAGAGCGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566:ENSBTAT00000029392:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(1.2=4.3)
A:
NA
C2:
PF0016924=PH=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development