GgaINT0008627 @ galGal3
Intron Retention
Gene
ENSGALG00000006695 | BCR
Description
NA
Coordinates
chr15:8855560-8864932:-
Coord C1 exon
chr15:8864792-8864932
Coord A exon
chr15:8855682-8864791
Coord C2 exon
chr15:8855560-8855681
Length
9110 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTTCTCTGTTTTTCACCAGCAC
3' ss Score
9.2
Exon sequences
Seq C1 exon
GATTTACTCAAGCACACTCCAGTGAGCCACCCTGATCATCCACTCCTGCAGGATGCCCTGCGGATCTCGCAGAACTTCCTTTCCAGCATCAATGAGGAGATCACTCCTCGTCGGCAGTCCATGACTGTAAAGAAGGGGGAG
Seq A exon
GTGAGTCTTCCTGCTTCCATTATTTTCTCAGTTCCTAAATACTGGTTGTGCCTTTGTGGAGCAGACTGGGAACCTGAGCTATTCATTTGTTTGTTGCTAAGAAACAGTTTATGCAGTGTCCTTGTTTTCTAAAGGATATTGTACAGCTCCTCTCTGTTTTCTGCTAGGAAAACAGTTTGGAAACCCAGAGGAACAGAATGATTAGAGTTTTGTCCTTAGCACCATTATAATAATTCGTCATACATCTTTTCTATGATGCACAGTTATGCAGTAAATGAATTTGTATTTTACCTGCAAACGCAAACCAAACTGGAAGCCTGGGAAGAGAAAATGATGAGGGAATATCAGAAATCATAGCAGGTTAGGAAGTGCTATGTTCCAGAATATTAATTCATGCCATAAAACTCTTTTTTTTTGCATCCTTGTTTCTAAAGAGTAATGTTGTTAATGGGACAATGGAACAAAACAAATGAAATGGGCTGGGAAAGCTAAGGGAGATGTTAAAATCCTACAGGTGTGGTACAATTTTTCTCAGCTCTGCTAGGAGTTTGAATATGCCCAAGAAGCTCTAGGATGTGGAGTTCCCTTGCCTGCATGTTGTGCTGTGCATGGAAGACATAAACCTACACAGCAGTAAACTTCTGTGTGCCTCAGTGGACTTGATTCATCTGCCTTGTAATTCCATTAGATGACAGTTCAGTCCTTCCCGATGAGGGCACGCTGGGACTGACAGAAGTACTAAGAGACAGGAGGATGCAGGAGATTGGACAAAAGAGAGGTGCAGCTCAGATAATAAATTTGTAAGAGGAATTGTGGCAGCATGCCGAAGACACTGGCTGATCAAAAGTAACCCCAAATTACCCTGTACAAAAACATCTCCTACAAAGCCCAGGAGGTTGTTAACATACCACAAACCTTCAAGATGTATTCCCAAATCCTGTCAGCTAAACATGCTTGCTTTTAGCTGTTAAACTGATTATCAGCTGACAAAGATCAGCCAGAAGCTACAGTACTGTAAATGGTGTTCATCTGCAACTCTTGCTCCTATTCTCATTTTGTTAACTGAGGAAAACTGCAGTTGAGAAGAGGGAAGACTGAGCAATTGAAGGCTGAGATGGAAGCTCAAACGTCAGTCACCAGGGCCTGGAGATAGTAGATAGCCTCATTAAAGTGGATGCTGATTGAGTCACAGCAGAAATTGCTGGCTGGAATGTCCCCTTGCAGGGGAGGGAGCACTTTGTGTTCTCCGGTTGTCTGTCAGCATCTCAATGAGGGATGCAGGCTTTGGAAAGTGTCATACAGAATCCTAATGAAGTGCCAGTGTGCAGGCAGCGGGGCTGGCTCGGGAGGATAATCCTGATGATCTCTTTTTGAAGCAATATGTTTGTCAGATCTTACAGAGCAGGAAGGGGGAGGCCTGTCGGAATTGTGCTCAGCAGGCCTGTTCACAAGCTCAGTGGTCCTCTAGTGCTTTTGTGTATGATAGAGGGAGGGAGAGAACACATCGAAAGAGAGGGCTGGAGGTGTGATGGAGGAAACTGGAACCCTTTGTGCTCTGCCTCACCGCACACTGCTTGTACCGAGCCCAGGGAAGAAAAGAACTTGCTTCTGATACTTCCCAGTTTGTCTTCCACTCTGGGAAGCTGAATGTGGATACTTTCTCCAGTTGTTTAAGATGAGTATTCCACTTTCTTTCAAATCAGTAACTGTCTGGAGAGTAGCTGTGTTCATTCTTTGCACAATAATCCAGAGGCAGAAGCAGGCTTCCAGCTGCTTTGTGTGGGTCAGTGATAGGTGTTGCTTCCTACAGGCTACTCACCTTAGGGTCATAGCTGGGTTTTGTTTATGCCTGTTCATTTTTCCTTTTCTCCTCCCACTCCCCTTGCTTATGCTTCCCCTGGGGTGACAGGACAGTGTGCAGTTTGCATTTCCTAATTGACTACCCTCAATACATAATGCATTTTTTTATTTTAATGAATCACCAGCTTGCTTTGAGAGCTTTTTTTTTTTGTCTTACTCCCCTTTGAAATTTCCTTGGTGAAAAAGAAGGAGGGAAAACAGCATTTTCCCCTCATACATTGCTTAGGTGCTGATCTGAGTTATCTTTTCTCCCCAGTCCTTGCTTTTTATGCAGAGTATGTTTCCTCCTTAGGGTGCATCATGGGGAGGAGTCAAATCTCCTTTTCTCCAGCTCTTTTTTTCAGGATCTCTTTGAACTGAGGAAAGCAGCGAGTGGCTAATCTCCCTAGTGACAGGCTGCTAAGAAGAGTGCAGGTCAAAACACAGAACAAGCTCATGAACAGTCTTGATCTCTTTTGCAAAAGGTGGTTCCCCACTCTGTGAGCATTGGCTCACACTGACCTGCCTGCTGCCTTCCTGAATGACATCAGATACCGTTCCTGCACATGAGTACCCAAGTCCTGCTTCTCATGGCAGGCTTTTTTTGCTAATTCTGGGTTCATGTATGTAAACAAAGTTTTCTGTGATGCACAAACATGATTTAATCTGCTGGGGCTGAATGAGTATTTCAGTTAGTGCGAGGAGACGAATGCAAAGGGAGTAAAACCATTCACTGCGGAGACAGAAAGGGCTGTAACAGGGAAGGGAGGGTCAACAGGGTAAGCCTACAAGCCAGGATGGAGGGAATACTGCACATAGTTTGGCCCTTGCTGCTGGTCAGGCTAACAATAACTAGAGTTCTTTGTTTTGCGGTTTGCTGCTAGTACAGAGGAGCCAGGATAGCACCAGCGCCGTCCTGTTTGGTTTGCAAGTGGTTCATTCAATGCACTTGTTTGGTGTTTGGGAAGGCAGCCGTGACCTCGAGGCTGAATTTGGCTAGCAGAGCACGGGAGTCCTGTGCTGAAGAGGAGGATGCATCATGTTCCTCCATGATCTGCAGAAGGGTTTGGATGTGTCCTCACAGCAAGACTCAAAGGAAAGGGAGAAGTGTGGTGGAGGAGTAAAGGCTTTGCAATTTTTGATGGCTCTTTGGGTCTTGCCTGGAGAATTTCAGGCCGAGCTCAGTCTGTACCCTTGAGTGGTTTGAGCCTTCTGTAGATGGCAGCACAAGGGAGCCAGGAGGGATTTACTGAAGGCTTTGAATCTGTCTCCCTTCAGCCTGATCTGTGCCATTCCCTCACTGCTCCTTTTCTTCCCAGCTTACTACTTCTGTAATTTTACTTCTTTACATTTTGATATTTTACCTGCAGATATCCACTGCACCAAGTCAAAACAATTGGTTTCACAAAGGGAGGGAAGAGGGGGGTCTGAGTAGCATAGTACCCTCTGACTCAGAAAGGGAATGTGGACAATCTCATACCCCTTAAGATTGTGGAGCAGGCCTCTTACTTGCTCACTTATGACCCTTCTTCTCCTCTGTTCTTTCATCGTTAATAGGAAACCTATTTAAGGTTTTACAGGGGTTGGTCCCCTAGAGAAGCAGGAAAATAAGTGCTTTGAGGTGAAGTATGTACAAATACTATATGCCAGAAGGGAGGGAGTTACATCCCTTCCAGACTTATTAACAAACGAGCTCTGCAGATTGCATGTTTCTTCTCAACTGAACCTAGATGCAAATGACTGTTGGAGCACGTGTCATCTTTCCCTGCCAAGATTTGTGCTTCCAGCTAATTCGGCCCATTCTTGTAAAGGAGAGGTTAACAAAACTGCAGACTTCATTTGGGAGATGTGTGTTCCTTCCTTGGCTGCAGCTATCTTGTACTCTTTGCAGGGTGTTGTTTCAGGATAGTTCAAACTAATCAGAGTGGTGGTGGCTGCCATTCTGCCTCACCCGTGGCTGCACACTCCTGCTCTCTTTGAAATGTTAGCACTGGGATTTGTGTGATCCCTCGGTGGTATGGAGGTACCTGAAAACTAAGCCATCTTTTAGTTTTGGGTCACCCTACTGGCTGAGTAGCTTAGTGTCTGTTATCCTCAGCACCAGTCTTTAGGCAAAGAGAGCAGACAGGATGTTCCTTCTGGAAATAAGTCCCCCCCGAATCACATTTTGGATCACCTTATGCTGCTGTGGACCTTCCGCTCCTGCCCTGGAGAGAAGAGGTTGTTGGCAGACTGCTCTCACACGTATCTAAACAAGGCTTGTAACTGCAGGCAAGAAACTGGATATCATTGCTTTAGGCTTCTGTTTGACTTAGAGTAGGAGAGGAGGTTTGCAAGGGAGCAGAAGTAAAAGCCTTTGGAAAGGTGAGGACTAAGCCTAGATGCAGGCAGGTATGCACAGCTCAAGGCCTGCTGCCTTACTTCTCCTGGAGCCCTTGGGCAGGTGTTGACAACAGAATACCTAAAAAATACTTCTAGATGCTTCACACTCTTCCTTACAGCTGGAGTCAGAGAGCCCCTGGTGACAGAAGCTTGAGAGGAAAAAAAAAAAGAAAAAAAGCTATTAAATATGCAAAAAGCAGCCAATTTATCTCTCTAAGCACAGAATCCCTTAATTTCACAATGCTGGTCTTGAAACATGCTCACACACGAGGAATCATTTTCTTCCCACACTCTGCAGAAAGCCAAACCACCTCTTCCTCACTGACATATGCCAATACCCATCTTCTGCTTTTACCCTTCTCCTCCTGCATCACACATGTTCCAGTCCTTCCGGGGGCTCTCACCCACGCACGCTGCTGCTGTCACCACGTTGGATGAGCTCCTTCCATGACTGTCACGTGAGGAGATGGCCCTTTGTACAGCTGTGGCTCTGGATGAATATATTTTCAAATTCCACTTCTTGTAATGTGTCTCAGACAGGCTGGTCTTCTGCCACACTTCTTGGAATTAAACAGTACACGACAGCAAAAGAATTTACTGTATACAAATAGCACAAAAACACTGTAGAATGAATAGATGAGCATGTTGGTAGCAGAGAAAGATGCTCACTGGCAGAGGTAAGAGGGGAACAGCAACAGGCAATCCAAAGAGGATATCCAAGCACTGAAGGACATAAAGGGAGTGAGTCTCTCTGGGACAGAGAGATGGGTGAGAGAAGCAGCAGCTAAAAACATGAAAAAGAAAGCAAGGTCTAGAAAGGAGACTTGGGATTTGTATTGAACCAATATAGGAGCACAGCAAGAGCCTCTGGAAGGTGACGGTCTGCCCAGGCCCTGTTTGAGAGGTAAAGGCTGTACCTGATTCACTCTGTAATGATATGAAATAAGAAGTTTTCCTCCAGATCTCCTGGAAAGTCTTTCAGTAGCTGAGCTGAGCGCTTGAGCTGAACACCTGCTAGTCTTGGGGCTGTCTGTAGGAGACATGGAGTCCCTTCACCACTGCACTGCCACTCTGATACTAAGCCCCTGCTTTGTTGGATGTTTCTTTGGTGTTTCTGTAATCTATATGTGATTTCAGGATATTTTAGGAAACCTTTAACACCTTTTGTAACGTTAGCAAACAGTGTAGCTTCAGAAACAAAGTTGAGAGACATGGTCTCCCAGCACATGTTGTATTTAACATATAATACCATAGGACCATTCATTCAGATAAAAGACCTCGTGTTTTGGGAGACTATTTAACCAAAGGCTAGCAAAGGAACAGCTATTGCTGCCCTCAGGAGAGAGTTAAACAATATAGAATTCAGTTCCCAAAATGTTAGGTATGACCTATGGAACTGAGGTGGCATGGGTACCTGACAGGCACAAGTGCTGCCTATGGGACCCCTGGCTTCCCCAGGGTGTGGGGTGGGATGGGCTGACTCATGCAGGAGGTCAGAACGATGCCTTGTGGCTGTGGGGCTTGGCAGAGATCTGGTAAGCCAGTTGGGAAATCCTTTTATTGTTTCCCTCTGACCTGCTGAACCCTCCTGGCAAGTTGACTCATTTGTAACAAAGGATGTGACCCTTTGCTGGAAGTGCTCCTCCTCGGCTCCACTGATGCTGAGCAGCCTGGTGCACGCTTGTTGTGGCCAGCCCTAATGAAAGTCCTGTTTCCCCAGAGAAGCTGGTAGTTAGACCTAATATCAAGCCCCACACCCTTGTGAGGTGACATTTACTGACTTGACCCACAAACTCATTTTCCTGTCCTCTCCTCACTAGATCCTTGGTTGCTCATTGTGGTAGTATACCTTTGCTCCAAAGGGGAACGTTTCTATACTAGCTCCTGAGTGAGAACAAATGAAGAATGACAGCTCTGGGAAGCTTAATATTTTCCTGAGTGGCTGACTAACATACATCCCTTTCACCTCTTTACTTCTGTTCTAAGCAAGCTTAGGAAATATACCCTTGTCTCCTTTCTACTCAGCTCTATTTCTGAGAGAACGTGCTGCCAAAAACTTTTGCTGCCTCAGAGAAGCACTGTGTCTTGTTGATCTGGATATTCGTATCCCAGAGTGCCAGCCAAAATAAACCAGTGCAAACAAGTGGTACCTTAGTCCCGGGTGGGAAGTACAAAGGCTTTTAAATCACAGCCCTGATTTGGCATCGTATAGCTGAGCTTTCTGCTTGGATTTTAGGGAGATGTGGGACAGAGAGCGTGACTGCTTGGAGAAAGTCTGCCTGCATGACGGCAGCCAAAGACTGTGCAATTAAGTGCAAATTTAGAAGGCAGAAAGAGGGATCACCTATGTGGACCAGGAGGGCCGTGTGGGGCCTTGCTGCAGGGATTGCTGATGGACTCTTCTTACTTTGTGGAGGCTTGGCACTAAGGCCTGCATTTTCTGTTCCCTCTGCATGGGCTTCCCTTTGTTGGAGGAAATGCTTACCTTCAAATTACTGTGGTTTAGATGAACAATAAGCAGAGGTTGGACAGGCAACAAGAAGCTATTCTCATTGCCCCAAAGGAGCTGAGCTGAGTTGCAGCATAATTAATATGCATCAGATCTAGCAGCCCGAGATCAGGTTTTGGGCTTGTTCACAACATCTCTTTCCCTGCTTCATTATTGCTCCCAAAAGAAATTCTTTACAGCTGTGGAGAGTGTTTTTGCTACTGCCAACATGCCTCCTCCTCATTTATGTATTTATTTATTTATTTATTTTCAAAGCTGGCTGTTTCTGGTTTCCTGCCTACCTGGGATTTGTTCATCAGGCAGGAGTGGGGAGCTGCGTGCAAGTGCACATCAGCAGCAGACATCAATGCAGGCAGGCCTCCCCTTCAAAACCACTGAGGAGAAGCCAGGAGGATCATGCCTACCTAAAAAATAAATATAAATGTATGTATGGGCCTTCCAGAGCCTGAATCACTGCTGGATGCTGCATCTTCACAGACTCGTGCCCAGAGATGGTGCAACAGTCTGGTAGGGAGCAGCGTTACCTTCCTGGTACTATGGGAAAGGTGCAGCTTTTGCTGCTGCTCACTGATTCCTGGGGGCTTTGTGTAGTGGCAGGCAGTCCCAAGGTGGGATGCTGACGTCCTGTCTGTGCTTCAGCAGTGTGTGGTTGCAAGCTGCAGACAGGGAAATGCAGACTCTTAGTCTGTGTCAGGAAGTTTAGGGCATTCTAGAACAGACAAGAAACAAGAACTGAAGACGGCAAGGACACTTCTGTCCCGTGTGTTTCCTGCCGTGCTGCCTGCTGGGGTTGGGGCTGATGTGGTTTGTTTTCATTTTGGAGAACCAGGGTGGGAGGGATGGTAGGAGGAAGGAGGAGGAGTGCGGGGGTTCGCACTCCCACACCCTCCGCAGTAAGCGTGCTCAAGGCTCGTTAAGTCATGCAGCAAGAAAAACCCGTGAGGCATAACCCTGAGAAACTGAGGCATGAATTCTGGTTTGGATGTCTTGACCTTGCTGAGGTTAACTGCTTTCCTATTGCACACTGCTGCACAGCTGAGCAGGGCTGCCTCTTGGCAGAGGACAGGTTTTGCATATGAGTTTCCTGCGGAGATGCTTGTCCCGCTGACAAGTCATGCGTGGGCCTGGAGAAGGCTGACAGTGACAGAGCAGAAGGGGGTGTTGTTGGTTAGCACTGAACAGTGTGAGCTGATCTCTCCTATCTCCAACCGTGGTGCTGTCTTGGCATGTACGGTGTGTGTAATGTCACTCATTGGTGTCAGCAGGCCATCCTCTTAGCTGGAGTAACAAGTAAAAGTACTATGGGTGAGGAAAGAGCATCTTAGGAAGCCTGTGTGCAGAAGCTGATGGCGGCTGCTTATACTGCCTGTGAAGCAAACTAACACTGACAGTTAGATGTATTTGTGGGAATAAAATTTGCCAAAGTGACATACCCTTGGCTTCCTTTTGAAAATCATGGGGAGATTTCTATTCTGCGTGATGTGCACTCGGACTCACATTGATCCTGACATCAGAACAGAAGGCCTGGGCGTAGTGGAGGGCTTGGAACTCCTGTGTTGGTCACTGGTGACAGCACAGACCCATCTGTCTCAGTGCCAGTGCTCCAGCCTTTTTGTCTGTCAGCTCTGGAGTCCCTGTAGGGGAAGAAGGGAAAAGATGCTTTTGTCCTCCAATGTATGCCTGCTATTTAGGAGGTTTTAAGTCTCCTGGGAACTAGAAATAGGAATAAAGGCATCGAGGTTGTGCAATTTACCTGTATCATCTAGGTTTGGGGAATATTTGATTTATTTTATTAATTATTTAGAAAAAGGGGGGGAAAAGCTTTTAAAGCTTTTAATAGGTGGGGGGTGGGGGCGTATTCAGATGATCCTGTTTAAACACAAGCAGGTAAGGGACTACAGAGAAGTTTGCTAGATATACATTTTGTATCTAGCAAATGCAGAGTGGAGGTAGCTCGAGCTGAATTCAGTAGCTGAATGATGGGGGAAGTCTGGACGGAAAAGTGGTGTGTGCTGCTCTCTGCTGGTTTGTGAGAGGGATGCTGTGATGGTGGCCCTTGGCTACTTAAAGCCAGGCAATGACTCACCATTAGTAATACTTGGTCTCAGAGACAGGTGATGGAAATAAACCTCAGCTCTGACCTGGCACCTGATGAATAAAGCCATTTTTGCCCTTGAGAGAGAAGGCAGCAGCAGGGAGCAGAGCTCACAGCAAGGAGCACATAACAGCCTTTTTTTTTTTTTTTTTCCTGAATTGGAACAGTTTATTGAATTGGCTCTGGTAGGAGTCAGGTATAAGGAGTGTGTTGCCGAGGGAGGCTCAGTGCTTTATCTGGGGCCCTTTCTTCACTAACGGAAACATTTTCTCTGTTTTTCACCAG
Seq C2 exon
CACCGGCAGCTCCTGAAGGACAGCTTCATGGTGGAGCTCGTTGAGGGGGCTCGCAAACTACGTCACGTCTTTCTTTTTACTGATCTGTTCCTGTGTGCCAAGCTCAAGAAGCAGATTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695:ENSGALT00000010819:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(1.2=4.3)
A:
NA
C2:
PF0016924=PH=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]