RnoINT0025286 @ rn6
Intron Retention
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14453960-14461521:-
Coord C1 exon
chr20:14461381-14461521
Coord A exon
chr20:14454082-14461380
Coord C2 exon
chr20:14453960-14454081
Length
7299 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGTCTACACCGTGCCCACAGCAC
3' ss Score
7.57
Exon sequences
Seq C1 exon
GACTTGCTAAAGCACACTCCATCCAGCCATCCCGACCATTCCCTGCTGCAAGATGCCCTCCGCATCTCTCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGGCAGTCCATGACCGTGAAAAAAGGAGAG
Seq A exon
GTGAGCGTGGCTGGTGGGGGACATGGGGCAGCCTCAGTCTTGGGCACAGCGCAGGACATGTGCTGGGTGTCCTTGGGGAATTCATAACTCTGCAGGGTATAGCATAGTCATGTATGTAGGACGTCAGGGTGACGTTGATTGGGTAATCCTGTACTGCCATGGCCACAGCAGCCTTCTGTCCTTGGCCCTCACTCAGCCACCTCTTGGGCTTGGAACAAATCTCGCCGTAAGCACAGGTCCCCATCTGAAGCAAGAGTGAACAGGAGGATAGCATGTTGTTTGCCTAGAACTGCATTTCCTCCTGATCTTTTCTTGGAAAGCCATGAACACTAGATGTAAGGTTTTGAATGACAAAGAAAAGGATTCACAGTTTAGGGGCTTGAGTCTGGCTGAGGAAGTGGATGTCTTCAGCCCAGAAACTCCATTCTCCTCCCTTTCCCTATGACATCCGGCGATGGCGATTCTCTTTCCTTGCGTCATCAATAAGCAGCCCTCATCCTGTGTTCTTGCCGCCCTTTGACAGAGGAGCCCGGCACATTGGTAGGCACATACCATTTCCATTGGGTGACATCTGGTGAGCTCCACACAGGTACAGGGCAGGGAGCTGCAATCTGACACGAGCTTTTTGTCAGAGATGGTGTTAAAGGTAGGCGAGCAGCTGCCTTATAGCCTCTTGGGTCTTGTGCATAGACAGGACAGTCAAGTTTACACTGGGCATGGAAAGATCATGTGACTGGCTGTGGTTGCCTCTGGGAACCTCTTCTTCCTTTTCTGGCCCACGTGCTTGGTGAGTTTTCTTCCCTCTGTCAGTGCATTGACAGGCAGGCTGCTCTTGTTTTGTCCTCTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGACAACAGTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATCATCATCAAGGCCAAAACATGGCAGCATCCAGCTGGAGCTGAGTTCTACATCTCCATTTGAAGGCTGCTAGCAGAATACTGACCTCCAGGCAGCTAGGATGAGTCTTACAGCCCACACTCACAGTGACACACCTACTCCAATGAGGCCCCGCCCACTCTGCAAAGACCATACCTACTCCAACGAGGCCACGCCCATTCTGCAAAGCCCACCCCTTCTAGTCATGCCACTCCCTGAGCCGAGCCTGTACAAACCATCCCACCCTCCACGTGCTTTTCTGGGAATCGCTGTTCTACAGTTGAGTTGAAAGTACACACTTAACCACGGTCTGACTGGGCTTAATTATGAGTGAGGCACCTGGTCACATTTCTCACAGTGGGCCAGGAGGAGCCTAGGAAGAAGAGGGAACCGCCCTTCAGTTCCATCACCAGACCCATCCAGGCTTTGGTTAAAGCCAACTCGGGCTCCATCCCGGTATCCTGAGGGCTTCCTTGAGCATTCCAGCACTCACAGACACTCCCTTCGATACCTGTTCCTTGTCTCTACAGTAGGGTAGGGGCTCACCTCCCCCAGCCTCACAGTGGTCTGACTTACGGACAGAGCAGTCAATGGCAGCTCTTATAACCCACACCCACAGTGACACCCCCGCTCCAATAAGGTCACATGTACTCCAACGAAGCCACGCCCGCTCCAAGGCCACGCCCGCTCTACCAAGGCCACACCCACAGTGGGCCTGGCCGTGGGTCCACCACTCAATGATCATTAAGCCCACTGAAAGCAGAAGTGGGACCCTAGCTTTTCTAGCTAGTAACCCCTGGGGGGGGGGCGGAAGTGTTGACAGAGCAGTCCCCACCTGGTTGTTTGGTACATGCAGGACCTGGGAAGCAGGTCTCATGTGGAGTTCACTGGGCCCTGTACCAGCTTCTCACCTAAGGCCAGTGGATAAGAGCAGAGCACATGGCTTCCCTATCAGCGTCCGATATATCTAACCGGGTGACCGACCCACATCTGCCAAGGTCTCACGTGTGCCTCACTGGGTGCCTGCTGCACACACCCATCNNNTCCACCTNNTGGTCAACTGTTCATTTAGGAGAGCTTGACAGGAGAAGCAAATGCTTGAACCGCTCTTGCCTCACCCCTTAATGTAGGACAGAATCCGCTCCTGTGTCCCTCCCTGTTTTCTGTTTAGGATCCCTGAAAACGAAATATTCAGAGCATAACTGCCTTAGGGACTAAGAGATCTCAGCCCCAGTTAGCAGCTGTCTGCAGGTCTGGAGGGTAGAATGCTTATGAAGACAGGAGCTCGTACCTGCAGAGGGGCTACCCCAGCTGCTAGAGGGAGAGAGGACTAATCTTTTGGTTTTTTGTTTGTTTTTTTCAAGATTCATTTATTATATAAGTACATGGTAGCTGGTAGACACACCAGAAGAGGGCATCGGATCCCATGACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCGGTCAGTGCTCTTAGCCACTGAGCCATCTCTCCAGCCCAAGAGAACTAGTCTTAGAGGCTTTGAAAATGTACAGTTCTACTTAACACCCCTTCATCCGGCTCTGTGGTTGCCTCAGGGCTCACCTAAGGCAGGGTGGCAGACAGGTGCCTGTATGTGTGCCCTGGATGCCCAGGCATATGAGCTCCTCCTCAGCGTCCTCCTCAGCTTCCTTCCAACAACACGGTGCTTGATGCTGTAGGACAGGTACCATAAGGACAGCTTTCCAACCCCATGTCGATCCGCACCCACGGCTTGCCCGTGACATGAGCGTCTGTGCTCTCGAAGCATCGAAACAGACATGGTGACGTAGAGATGCCATCTGTGTTGGAGATGGTGCAGACCACCCTTCATGTTACTAGCCAGGAAAGAACCTGTAAGCCTCCCCGTGGGATGGGTCAGGGCATTGTAGAGAGACCCAAGTATGAGCTAGGGGCAGCACCTGACCTCTAGTCAGTCTGCTCTGATCTCTTCATGCTTTTTAGCCAAGTCTTCCCGCTCCAGAGCTGGCCCTTTTATGGTAGTTTCTGGGCAGCGTTAGAGGTAGTTTCCAAACTGAACAGAGGCCAGCAGCCTCTGGCAGGCCAGAATCCTCGCCCTAATTCACCAGGATTCTAGCTACCCAGGATGGGGAGTCCGGGCTCTCCTCTCAGCTTCTGGATCAGAGGATCTTGGAGACACATTTTCCTTCCAGGCCCCAGTCCTGTGAGCTGGTGGGTGGGTGCATACTTGTTTATCCGAATTAACTTCACAGTTAGAGAACTAGATCCCTGCTGCTGGGTAATTTCCTCCAAGTGGTTGTTGCCTCTCCGCTTTGAGGTCTGCAACTAGGGCTTTGCAGGAGATTCGAATGATCCCAGTTCTCTGCCTGGGATCCTAGAGGCCCCTTGTGGAGGGAGGCGGGCAATGGGTTCCGAAGGTGCTTTACAAAGGAACCGTGCTGGCGAAGGTGGACGGTGAGAGCAACGGAGCTTAGGTGGAGAATGCTAGGCTTACCTGCTGCTGCTTGAAAAGACCTGGGGGACTAAGGAAATCTATACCTCGGTACTAGAGCGCTTGCCTATCATGCTTGAAACACTAGACTCCGTTCCGGCAACACGTACACACACACAGAGTTGTTGAGTAACTGCAGCTGGAAAAGTCAAACCCATTCACAAGAGGTCTTAAGGAGCAGTGGTGAGCCAAGATGGGAGAAGGCTGAGACACCCACCCCACTCCCCACCCAGTAGTAGGAATGCTTGCTTGCTGTCGTGAACTGGGACACATTGTCCACAGCCCAAGCAGAGGATCAGAAATGTAAGTATAACACAATATCAGAATATACAAGAGTCCCGGGCTCAGTCCTCAGACCACAGAAGCCTCAGCAAATGGTGTCCAGTAGTCCCTGTGAGGCCCTATGTGTGTGTTGTCTCATTTAATCCCCCTGTCCCCCAAATGCCACCAAGCAGGTCTCTCCGTATTCATCTTACTTCTTCTCCTACGGCACTAACCTGGAACCCAGGTCCTTGTCCATGCCAGGCAAACCCTTCGTCACTGAGTTACAGTCCAGCCCCTGCCCCAGCCACCCCGTGTGATCGAAACCGAGGCAGAGATAAAGTAAACACACTGCACCAAGGAGAAAGAGGGTGTGTACGTTAAATCCACAGAGCGCACTTCTAAATTTAGTCTGCCCAAAGGAGGCCCGGGTTGGGCAGGTTCCCAAGCAATGCCAGGGGACAGGCTGAGAAAGCAGAGGGAATCCCAGTTCCCCTCACTCCCAGGGTGCCCGGCCATGTCGGCAGGCGATGGTGTCCCTTGCAGCTGGTATTTCCTACCTGAATGAGGAACGCCTACCCCCTCCACATAACAAACGCACACATATCTTCATCCATTGCCCTCTCCCACGACAAGGGGACAGAGACACCTGCATAGGGTCTCCTACCACACAGAGAAACCAGGACGCACATTGTTGTGTTTTATAAAAAAGAAAACGAAGAAGGGGCGTGTTTGGTGGAGGTGATGTAGGGTGAGGAGGAAGGGAGTGCCTCAGCAAACCCATGCTGCTTCCCCCTGAGGTACCAGTCACATAACAGTATAGTATAGATCAAAGTTTATTTAGGGCATGGGGAAGGAGTTGAGGGAGGGAGGGAGGGGAGAGAGAGAGAGAGAGAGAGAGAGGAGGAGGATGAAGAAGGAGGAGGAAGAGGAGGGAGGGAGGGACGGAGGGAGAGGGAAAATTAATACACAGGAGTAAAGGCCAGCCATGAGCATGTGGTGGGGGGGGGGGGGATAGGGAGAGAAGGGACAGAGGGGAAGGAAGAAGAGAGCAAGAGAAGAGAGTGAGGAAGGGGCAAGCAGCCCCTTTTATAGTGAGTCAGGCACACCTGGCAGTTGCCAGGTAACCGTGGGGCAGGGCGGAGCCTAGAAGGAACACCCAACAGTCTCACACTCACGCAGGAGCCTGCACACAGTCCGGCCATTTCAGCCAACCGGCCTCTCTGAGTTACAGACTCTTTGGATCTGGGTCCAGTGAGGTCCTGGGCTGTCTGTCTTAGGGCAGGAGTGGGTGGGAGGCTGTCCTGGGTGAGACTTTGAGTCAACAGTTTTTCCTAACCGGCTGGCCTCTCACTGTTGAGGCTGTTAGCAGAGGTGGTCCAGCCTTGACCTCGCCTGTGTGCCCTGGAGAGTAGAAGCAGGCTGGAGCGGAAGCCATTACTGGGCACCCTGTGCTTCCGGATCTATAATGAGGCTGAGGGGCACTTCTGATTCAGGTGTCTCCTGGGCAGACAAAGCCTGAGCCTGAACATTCCCAGACTGGGGCCCAGGGCTGGCAAGGTTGGCTGGGAAGTGTTTGAGGGCCCCCTGTGATGAAGCTGGGGGGAGGGATTAAGTAACCGTTGAGATGTCAGAAATATTTTTTACAACCAAGCTAAGCCTGCCTCTTGGAAGCTCTTAAGCCTGCAATCCATTGAGCATTCAGTGAGCTCTTGTCTGGACGTTACTGACCCACAGCTTCTAGGCTGAGCTTAGGGTTCCCTCTGCTGGCCATTGCAAAAAGTTCAGTTACTTTGTACAGAGAAAAGACTGCCACCTTGTGGTCTGAGGACTCATCTCTGTGTCCTTACTGAGGAAGCAGCCGTGTAATCATTCTCCGTGCAGATGTTGGTGTTCCGTATCCTGTATCCCTCTACCACTGACCTAAAAAAAAAAAAAAAATCTAGATACCCAGTTTCTAGAATCTTCCCTCCAGCCTCATACATGTCTTCAGATCTGTATAGTGTTGCCCTGGGGAAATAGCTCATCCGTTTAAAGGCTAGGCTCACAGCCCCAAAGACAACTGCGGGTATACTGTTTCTTGAATCTTGTAGCTATGATCACCCAGAAAACCTTCTGCCCTGTGGAAGTATGTATGAGAGAGTGAGGGAGTCATGGTCTTAGCATGCTGGTAGCCTTCCTGCCCTTCTACATATGGGCACTGGCCTGTAGGAAATACTTGGCTGTCTTGTGCAAGCAGTTAGGTGACCATGAGGAGCTAAGCTGCCTGTGTTGGTGACATGTAGCTCTCCATGTCAGGGGATCTCAGGGGACCTGCCCAGGCTGCACTGGATTCTAACTTCTGTTCCTACAGAGCGTGGGGAGTAGAACTTAGAAGTCAGAAGCCGTAGGCCCAGAGGAACTGGGCTCACTGCACAGCCCCAGTCCACTGTGATGAGGGTAGGGAGCATCCTGCTTCTCAGGGGGAGTAGGGGTGCAGCCACACCTCAGGCTGAGGTAGGCAATAGGCTTCCATGCACTTTGTTGTAAACGTCTGCCCTACAGATCCTTCCCAGGCAGTGTCAAGAGCAATCAGCCTCTAGAAAGCCTTTCTGGAGCCAAGAGCTTCCCCAGGCTTGTGAACTCCTAAGGTCAATGAATACCCTGCTGTATGCCATCCTTGGGATGGCCTTTCTGGGGGCCATTTTCTTCTCTTTGAATTGAGCTTGGGGGTGGCTCACAGTAGCCACACCTCACCCTACCTCTGTCCTTTGTGTGGCACATCGCCCAAGCCACATGAGATGTCTGACTTTGTTTTAATACATTGATGGCTTACCTCATCGAGCCCGCTTAGCCACGTCTTGAGCTGTACACGTGAGGTGGACTGTCCCTTGGCTCTCAGATGGACTGTGGAGGTACAGAAGGCTCAGGGCCTGCAGGGAGACTATCTTCATATTCTTTTACTTGTCCTAGGCCCTGTCCACCTCTGTCACACATCCTATGCTGCCCACCTGTTCTCTCTGTTGGCTTTGTTCCTAGGCAACAGATGTCTGGGCGGAGATCAGAGGTGGGGTCCACAGCTTTGTGAAGCCTTCAGCGTTCGACTCAGCCCTAGACTCAGCCCATGTCCTCAGCACTGCCTCTTCTCAGAAAATTCCTGGGCCCATCTTCTCACTACTGAAAGGCTGCCCAGTCAGGCCCTGGAGTACCGTGTGTGCCTGGGAACAATCACTTGACAGGAGTATCCCTTTTATGTGGCTAATCTCAAGTTAACACCTTCGCGAGGCATTGGTCACCCCAAAGTAACGTCCATCTCTGCCCTATTCTCTGGTGTTCTTCTGGGGGCCAAGCATCTAGAAAGGACTCAGAATCGTTGGCTGAATAAAAGAGATGCCAGGAGTCACATCTATTAGCAGGCAAATAAAATAAATAGAACATTCTAGGAAGTTAATGTACAGGAAGTGAAAATCCCCAAAGAGGTTTCTAGGTGATCTCCTTGCTCCTGCTGAGCCCAGAGGGCCCAGTATCCCCCTTCCCACCCCATCCATCACCCTGACTTGCCCCTGTCTACACCGTGCCCACAG
Seq C2 exon
CACCGGCAGCTGCTGAAGGATAGCTTCATGGTGGAGCTGGTGGAGGGGGCCCGCAAGCTGCGTCACATCTTCCTGTTCACTGACCTGCTCCTCTGCACCAAGCTGAAGAAACAAAGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304:ENSRNOT00000001766:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
A:
NA
C2:
PF0016924=PH=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]