GgaINT0008627 @ galGal4
Intron Retention
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8599903-8609273:-
Coord C1 exon
chr15:8609133-8609273
Coord A exon
chr15:8600025-8609132
Coord C2 exon
chr15:8599903-8600024
Length
9108 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTTCTCTGTTTTTCACCAGCAC
3' ss Score
9.2
Exon sequences
Seq C1 exon
GATTTACTCAAGCACACTCCAGTGAGCCACCCTGATCATCCACTCCTGCAGGATGCCCTGCGGATCTCGCAGAACTTCCTTTCCAGCATCAATGAGGAGATCACTCCTCGTCGGCAGTCCATGACTGTAAAGAAGGGGGAG
Seq A exon
GTGAGTCTTCCTGCTTCCATTATTTTCTCAGTTCCTAAATACTGGTTGTGCCTTTGTGGAGCAGACTGGGAACCTGAGCTATTCATTTGTTTGTTGCTAAGAAACAGTTTATGCAGTGTCCTTGTTTTCTAAAGGATATTGTACAGCTCCTCTCTGTTTTCTGCTAGGAAAACAGTTTGGAAACCCAGAGGAACAGAATGATTAGAGTTTTGTCCTTAGCACCATTATAATAATTCGTCATACATCTTTTCTATGATGCACAGTTATGCAGTAAATGAATTTGTATTTTACCTGCAAACGCAAACCAAACTGGAAGCCTGGGAAGAGAAAATGATGAGGGAATATCAGAAATCATAGCAGGTTAGGAAGTGCTATGTTCCAGAATATTAATTCATGCCATAAAACTCTTTTTTTTTGCATCCTTGTTTCTAAAGAGTAATGTTGTTAATGGGACAATGGAACAAAACAAATGAAATGGGCTGGGAAAGCTAAGGGAGATGTTAAAATCCTACAGGTGTGGTACAATTTTTCTCAGCTCTGCTAGGAGTTTGAATATGCCCAAGAAGCTCTAGGATGTGGAGTTCCCTTGCCTGCATGTTGTGCTGTGCATGGAAGACATAAACCTACACAGCAGTAAACTTCTGTGTGCCTCAGTGGACTTGATTCATCTGCCTTGTAATTCCATTAGATGACAGTTCAGTCCTTCCCGATGAGGGCACGCTGGGACTGACAGAAGTACTAAGAGACAGGAGGATGCAGGAGATTGGACAAAAGAGAGGTGCAGCTCAGATAATAAATTTGTAAGAGGAATTGTGGCAGCATGCCGAAGACACTGGCTGATCAAAAGTAACCCCAAATTACCCTGTACAAAAACATCTCCTACAAAGCCCAGGAGGTTGTTAACATACCACAAACCTTCAAGATGTATTCCCAAATCCTGTCAGCTAAACATGCTTGCTTTTAGCTGTTAAACTGATTATCAGCTGACAAAGATCAGCCAGAAGCTACAGTACTGTAAATGGTGTTCATCTGCAACTCTTGCTCCTATTCTCATTTTGTTAACTGAGGAAAACTGCAGTTGAGAAGAGGGAAGACTGAGCAATTGAAGGCTGAGATGGAAGCTCAAACGTCAGTCACCAGGGCCTGGAGATAGTAGATAGCCTCATTAAAGTGGATGCTGATTGAGTCACAGCAGAAATTGCTGGCTGGAATGTCCCCTTGCAGGGGAGGGAGCACTTTGTGTTCTCCGGTTGTCTGTCAGCATCTCAATGAGGGATGCAGGCTTTGGAAAGTGTCATACAGAATCCTAATGAAGTGCCAGTGTGCAGGCAGCGGGGCTGGCTCGGGAGGATAATCCTGATGATCTCTTTTTGAAGCAATATGTTTGTCAGATCTTACAGAGCAGGAAGGGGGAGGCCTGTCGGAATTGTGCTCAGCAGGCCTGTTCACAAGCTCAGTGGTCCTCTAGTGCTTTTGTGTATGATAGAGGGAGGGAGAGAACACATCGAAAGAGAGGGCTGGAGGTGTGATGGAGGAAACTGGAACCCTTTGTGCTCTGCCTCACCGCACACTGCTTGTACCGAGCCCAGGGAAGAAAAGAACTTGCTTCTGATACTTCCCAGTTTGTCTTCCACTCTGGGAAGCTGAATGTGGATACTTTCTCCAGTTGTTTAAGATGAGTATTCCACTTTCTTTCAAATCAGTAACTGTCTGGAGAGTAGCTGTGTTCATTCTTTGCACAATAATCCAGAGGCAGAAGCAGGCTTCCAGCTGCTTTGTGTGGGTCAGTGATAGGTGTTGCTTCCTACAGGCTACTCACCTTAGGGTCATAGCTGGGTTTTGTTTATGCCTGTTCATTTTTCCTTTTCTCCTCCCACTCCCCTTGCTTATGCTTCCCCTGGGGTGACAGGACAGTGTGCAGTTTGCATTTCCTAATTGACTACCCTCAATACATAATGCATTTTTTTATTTTAATGAATCACCAGCTTGCTTTGAGAGCTTTTTTTTTTTGTCTTACTCCCCTTTGAAATTTCCTTGGTGAAAAAGAAGGAGGGAAAACAGCATTTTCCCCTCATACATTGCTTAGGTGCTGATCTGAGTTATCTTTTCTCCCCAGTCCTTGCTTTTTATGCAGAGTATGTTTCCTCCTTAGGGTGCATCATGGGGAGGAGTCAAATCTCCTTTTCTCCAGCTCTTTTTTTCAGGATCTCTTTGAACTGAGGAAAGCAGCGAGTGGCTAATCTCCCTAGTGACAGGCTGCTAAGAAGAGTGCAGGTCAAAACACAGAACAAGCTCATGAACAGTCTTGATCTCTTTTGCAAAAGGTGGTTCCCCACTCTGTGAGCATTGGCTCACACTGACCTGCCTGCTGCCTTCCTGAATGACATCAGATACCGTTCCTGCACATGAGTACCCAAGTCCTGCTTCTCATGGCAGGCTTTTTTTGCTAATTCTGGGTTCATGTATGTAAACAAAGTTTTCTGTGATGCACAAACATGATTTAATCTGCTGGGGCTGAATGAGTATTTCAGTTAGTGCGAGGAGACGAATGCAAAGGGAGTAAAACCATTCACTGCGGAGACAGAAAGGGCTGTAACAGGGAAGGGAGGGTCAACAGGGTAAGCCTACAAGCCAGGATGGAGGGAATACTGCACATAGTTTGGCCCTTGCTGCTGGTCAGGCTAACAATAACTAGAGTTCTTTGTTTTGCGGTTTGCTGCTAGTACAGAGGAGCCAGGATAGCACCAGCGCCGTCCTGTTTGGTTTGCAAGTGGTTCATTCAATGCACTTGTTTGGTGTTTGGGAAGGCAGCCGTGACCTCGAGGCTGAATTTGGCTAGCAGAGCACGGGAGTCCTGTGCTGAAGAGGAGGATGCATCATGTTCCTCCATGATCTGCAGAAGGGTTTGGATGTGTCCTCACAGCAAGACTCAAAGGAAAGGGAGAAGTGTGGTGGAGGAGTAAAGGCTTTGCAATTTTTGATGGCTCTTTGGGTCTTGCCTGGAGAATTTCAGGCCGAGCTCAGTCTGTACCTTGAGTGGTTTGAGCCTTCTGTAGATGGCAGCACAAGGGAGCCAGGAGGGATTTACTGAAGGCTTTGAATCTGTCTCCCTTCAGCCTGATCTGTGCCATTCCCTCACTGCTCCTTTTCTTCCCAGCTTACTACTTCTGTAATTTTACTTCTTTACATTTTGATATTTTACCTGCAGATATCCACTGCACCAAGTCAAAACAATTGGTTTCACAAAGGGAGGGAAGAGGGGGGTCTGAGTAGCATAGTACCCTCTGACTCAGAAAGGGAATGTGGACAATCTCATACCCCTTAAGATTGTGGAGCAGGCCTCTTACTTGCTCACTTATGACCCTTCTTCTCCTCTGTTCTTTCATCGTTAATAGGAAACCTATTTAAGGTTTTACAGGGGTTGGTCCCCTAGAGAAGCAGGAAAATAAGTGCTTTGAGGTGAAGTATGTACAAATACTATATGCCAGAAGGGAGGGAGTTACATCCCTTCCAGACTTATTAACAAACGAGCTCTGCAGATTGCATGTTTCTTCTCAACTGAACCTAGATGCAAATGACTGTTGGAGCACGTGTCATCTTTCCCTGCCAAGATTTGTGCTTCCAGCTAATTCGGCCCATTCTTGTAAAGGAGAGGTTAACAAAACTGCAGACTTCATTTGGGAGATGTGTGTTCCTTCCTTGGCTGCAGCTATCTTGTACTCTTTGCAGGGTGTTGTTTCAGGATAGTTCAAACTAATCAGAGTGGTGGTGGCTGCCATTCTGCCTCACCCGTGGCTGCACACTCCTGCTCTCTTTGAAATGTTAGCACTGGGATTTGTGTGATCCCTCGGTGGTATGGAGGTACCTGAAAACTAAGCCATCTTTTAGTTTTGGGTCACCCTACTGGCTGAGTAGCTTAGTGTCTGTTATCCTCAGCACCAGTCTTTAGGCAAAGAGAGCAGACAGGATGTTCCTTCTGGAAATAAGTCCCCCCCGAATCACATTTTGGATCACCTTATGCTGCTGTGGACCTTCCGCTCCTGCCCTGGAGAGAAGAGGTTGTTGGCAGACTGCTCTCACACGTATCTAAACAAGGCTTGTAACTGCAGGCAAGAAACTGGATATCATTGCTTTAGGCTTCTGTTTGACTTAGAGTAGGAGAGGAGGTTTGCAAGGGAGCAGAAGTAAAAGCCTTTGGAAAGGTGAGGACTAAGCCTAGATGCAGGCAGGTATGCACAGCTCAAGGCCTGCTGCCTTACTTCTCCTGGAGCCCTTGGGCAGGTGTTGACAACAGAATACCTAAAAAATACTTCTAGATGCTTCACACTCTTCCTTACAGCTGGAGTCAGAGAGCCCCTGGTGACAGAAGCTTGAGAGGAAAAAAAAAAGAAAAAAAGCTATTAAATATGCAAAAAGCAGCCAATTTATCTCTCTAAGCACAGAATCCCTTAATTTCACAATGCTGGTCTTGAAACATGCTCACACACGAGGAATCATTTTCTTCCCACACTCTGCAGAAAGCCAAACCACCTCTTCCTCACTGACATATGCCAATACCCATCTTCTGCTTTTACCCTTCTCCTCCTGCATCACACATGTTCCAGTCCTTCCGGGGGCTCTCACCCACGCACGCTGCTGCTGTCACCACGTTGGATGAGCTCCTTCCATGACTGTCACGTGAGGAGATGGCCCTTTGTACAGCTGTGGCTCTGGATGAATATATTTTCAAATTCCACTTCTTGTAATGTGTCTCAGACAGGCTGGTCTTCTGCCACACTTCTTGGAATTAAACAGTACACGACAGCAAAAGAATTTACTGTATACAAATAGCACAAAAACACTGTAGAATGAATAGATGAGCATGTTGGTAGCAGAGAAAGATGCTCACTGGCAGAGGTAAGAGGGGAACAGCAACAGGCAATCCAAAGAGGATATCCAAGCACTGAAGGACATAAAGGGAGTGAGTCTCTCTGGGACAGAGAGATGGGTGAGAGAAGCAGCAGCTAAAAACATGAAAAAGAAAGCAAGGTCTAGAAAGGAGACTTGGGATTTGTATTGAACCAATATAGGAGCACAGCAAGAGCCTCTGGAAGGTGACGGTCTGCCCAGGCCCTGTTTGAGAGGTAAAGGCTGTACCTGATTCACTCTGTAATGATATGAAATAAGAAGTTTTCCTCCAGATCTCCTGGAAAGTCTTTCAGTAGCTGAGCTGAGCGCTTGAGCTGAACACCTGCTAGTCTTGGGGCTGTCTGTAGGAGACATGGAGTCCCTTCACCACTGCACTGCCACTCTGATACTAAGCCCCTGCTTTGTTGGATGTTTCTTTGGTGTTTCTGTAATCTATATGTGATTTCAGGATATTTTAGGAAACCTTTAACACCTTTTGTAACGTTAGCAAACAGTGTAGCTTCAGAAACAAAGTTGAGAGACATGGTCTCCCAGCACATGTTGTATTTAACATATAATACCATAGGACCATTCATTCAGATAAAAGACCTCGTGTTTTGGGAGACTATTTAACCAAAGGCTAGCAAAGGAACAGCTATTGCTGCCCTCAGGAGAGAGTTAAACAATATAGAATTCAGTTCCCAAAATGTTAGGTATGACCTATGGAACTGAGGTGGCATGGGTACCTGACAGGCACAAGTGCTGCCTATGGGACCCCTGGCTTCCCCAGGGTGTGGGGTGGGATGGGCTGACTCATGCAGGAGGTCAGAACGATGCCTTGTGGCTGTGGGGCTTGGCAGAGATCTGGTAAGCCAGTTGGGAAATCCTTTTATTGTTTCCCTCTGACCTGCTGAACCCTCCTGGCAAGTTGACTCATTTGTAACAAAGGATGTGACCCTTTGCTGGAAGTGCTCCTCCTCGGCTCCACTGATGCTGAGCAGCCTGGTGCACGCTTGTTGTGGCCAGCCCTAATGAAAGTCCTGTTTCCCCAGAGAAGCTGGTAGTTAGACCTAATATCAAGCCCCACACCCTTGTGAGGTGACATTTACTGACTTGACCCACAAACTCATTTTCCTGTCCTCTCCTCACTAGATCCTTGGTTGCTCATTGTGGTAGTATACCTTTGCTCCAAAGGGGAACGTTTCTATACTAGCTCCTGAGTGAGAACAAATGAAGAATGACAGCTCTGGGAAGCTTAATATTTTCCTGAGTGGCTGACTAACATACATCCCTTTCACCTCTTTACTTCTGTTCTAAGCAAGCTTAGGAAATATACCCTTGTCTCCTTTCTACTCAGCTCTATTTCTGAGAGAACGTGCTGCCAAAAACTTTTGCTGCCTCAGAGAAGCACTGTGTCTTGTTGATCTGGATATTCGTATCCCAGAGTGCCAGCCAAAATAAACCAGTGCAAACAAGTGGTACCTTAGTCCCGGGTGGGAAGTACAAAGGCTTTTAAATCACAGCCCTGATTTGGCATCGTATAGCTGAGCTTTCTGCTTGGATTTTAGGGAGATGTGGGACAGAGAGCGTGACTGCTTGGAGAAAGTCTGCCTGCATGACGGCAGCCAAAGACTGTGCAATTAAGTGCAAATTTAGAAGGCAGAAAGAGGGATCACCTATGTGGACCAGGAGGGCCGTGTGGGGCCTTGCTGCAGGGATTGCTGATGGACTCTTCTTACTTTGTGGAGGCTTGGCACTAAGGCCTGCATTTTCTGTTCCCTCTGCATGGGCTTCCCTTTGTTGGAGGAAATGCTTACCTTCAAATTACTGTGGTTTAGATGAACAATAAGCAGAGGTTGGACAGGCAACAAGAAGCTATTCTCATTGCCCCAAAGGAGCTGAGCTGAGTTGCAGCATAATTAATATGCATCAGATCTAGCAGCCCGAGATCAGGTTTTGGGCTTGTTCACAACATCTCTTTCCCTGCTTCATTATTGCTCCCAAAAGAAATTCTTTACAGCTGTGGAGAGTGTTTTTGCTACTGCCAACATGCCTCCTCCTCATTTATGTATTTATTTATTTATTTATTTTCAAAGCTGGCTGTTTCTGGTTTCCTGCCTACCTGGGATTTGTTCATCAGGCAGGAGTGGGGAGCTGCGTGCAAGTGCACATCAGCAGCAGACATCAATGCAGGCAGGCCTCCCCTTCAAAACCACTGAGGAGAAGCCAGGAGGATCATGCCTACCTAAAAAATAAATATAAATGTATGTATGGGCCTTCCAGAGCCTGAATCACTGCTGGATGCTGCATCTTCACAGACTCGTGCCCAGAGATGGTGCAACAGTCTGGTAGGGAGCAGCGTTACCTTCCTGGTACTATGGGAAAGGTGCAGCTTTTGCTGCTGCTCACTGATTCCTGGGGGCTTTGTGTAGTGGCAGGCAGTCCCAAGGTGGGATGCTGACGTCCTGTCTGTGCTTCAGCAGTGTGTGGTTGCAAGCTGCAGACAGGGAAATGCAGACTCTTAGTCTGTGTCAGGAAGTTTAGGGCATTCTAGAACAGACAAGAAACAAGAACTGAAGACGGCAAGGACACTTCTGTCCCGTGTGTTTCCTGCCGTGCTGCCTGCTGGGGTTGGGGCTGATGTGGTTTGTTTTCATTTTGGAGAACCAGGGTGGGAGGGATGGTAGGAGGAAGGAGGAGGAGTGCGGGGGTTCGCACTCCCACACCCTCCGCAGTAAGCGTGCTCAAGGCTCGTTAAGTCATGCAGCAAGAAAAACCCGTGAGGCATAACCCTGAGAAACTGAGGCATGAATTCTGGTTTGGATGTCTTGACCTTGCTGAGGTTAACTGCTTTCCTATTGCACACTGCTGCACAGCTGAGCAGGGCTGCCTCTTGGCAGAGGACAGGTTTTGCATATGAGTTTCCTGCGGAGATGCTTGTCCCGCTGACAAGTCATGCGTGGGCCTGGAGAAGGCTGACAGTGACAGAGCAGAAGGGGGTGTTGTTGGTTAGCACTGAACAGTGTGAGCTGATCTCTCCTATCTCCAACCGTGGTGCTGTCTTGGCATGTACGGTGTGTGTAATGTCACTCATTGGTGTCAGCAGGCCATCCTCTTAGCTGGAGTAACAAGTAAAAGTACTATGGGTGAGGAAAGAGCATCTTAGGAAGCCTGTGTGCAGAAGCTGATGGCGGCTGCTTATACTGCCTGTGAAGCAAACTAACACTGACAGTTAGATGTATTTGTGGGAATAAAATTTGCCAAAGTGACATACCCTTGGCTTCCTTTTGAAAATCATGGGGAGATTTCTATTCTGCGTGATGTGCACTCGGACTCACATTGATCCTGACATCAGAACAGAAGGCCTGGGCGTAGTGGAGGGCTTGGAACTCCTGTGTTGGTCACTGGTGACAGCACAGACCCATCTGTCTCAGTGCCAGTGCTCCAGCCTTTTTGTCTGTCAGCTCTGGAGTCCCTGTAGGGGAAGAAGGGAAAAGATGCTTTTGTCCTCCAATGTATGCCTGCTATTTAGGAGGTTTTAAGTCTCCTGGGAACTAGAAATAGGAATAAAGGCATCGAGGTTGTGCAATTTACCTGTATCATCTAGGTTTGGGGAATATTTGATTTATTTTATTAATTATTTAGAAAAAGGGGGGGAAAAGCTTTTAAAGCTTTTAATAGGTGGGGGGTGGGGGCGTATTCAGATGATCCTGTTTAAACACAAGCAGGTAAGGGACTACAGAGAAGTTTGCTAGATATACATTTTGTATCTAGCAAATGCAGAGTGGAGGTAGCTCGAGCTGAATTCAGTAGCTGAATGATGGGGGAAGTCTGGACGGAAAAGTGGTGTGTGCTGCTCTCTGCTGGTTTGTGAGAGGGATGCTGTGATGGTGGCCCTTGGCTACTTAAAGCCAGGCAATGACTCACCATTAGTAATACTTGGTCTCAGAGACAGGTGATGGAAATAAACCTCAGCTCTGACCTGGCACCTGATGAATAAAGCCATTTTTGCCCTTGAGAGAGAAGGCAGCAGCAGGGAGCAGAGCTCACAGCAAGGAGCACATAACAGCCTTTTTTTTTTTTTTTTTCCTGAATTGGAACAGTTTATTGAATTGGCTCTGGTAGGAGTCAGGTATAAGGAGTGTGTTGCCGAGGGAGGCTCAGTGCTTTATCTGGGGCCCTTTCTTCACTAACGGAAACATTTTCTCTGTTTTTCACCAG
Seq C2 exon
CACCGGCAGCTCCTGAAGGACAGCTTCATGGTGGAGCTCGTTGAGGGGGCTCGCAAACTACGTCACGTCTTTCTTTTTACTGATCTGTTCCTGTGTGCCAAGCTCAAGAAGCAGATTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695:ENSGALT00000010819:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
A:
NA
C2:
PF0016924=PH=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]