BtaINT0026733 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010582 | BRD3
Description
Bos taurus bromodomain containing 3 (BRD3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076873]
Coordinates
chr11:104863856-104868698:-
Coord C1 exon
chr11:104868475-104868698
Coord A exon
chr11:104864149-104868474
Coord C2 exon
chr11:104863856-104864148
Length
4326 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCCCTTGCCTTCTGCCTCAGACA
3' ss Score
8.46
Exon sequences
Seq C1 exon
CTGAAGGCTGTGCACGAGCAGCTGGCGGCTCTGTCTCAGGCGCCGGTGAACAAGCCAAAGAGGAAGAAGGAGAAGAAGGAGAAGAAGAAGAAGGACAAGGACAAGGAGCGGCACAAGGCCAAGGCCGAGGAGGAGAAGCGGGCCAAGGCCGCCACGCCCGCCAAGCAGGCCCCGCAGAAGAAGGCGCCCGCCAAGAAGGCCAACAGCACCAGCGCGGCCGGCAG
Seq A exon
GTGGGCGCCAGGCGGGCTGGCACCAGCTGGCGGGGGCACGGGGCTGTCAGGAGAGAGGGCGGGGTGGGGGGGCATTGGTGGGCCTTGTCTTGCCCCCATTGTGGGGAGACTGTGGGGACCCAGCGAGGTCTCCTCCAGGAAGGGTATGGGCTCTGGAGGGCAGAGCTCAACCTCCCGGGGGGCTGGCCTCAAGACAGGCGTGGAGACCTCTAGAGTCGCGGTTTTGGGGACGTTTTCCTGATCTGGGCAGGGCTTTTCTTTGGGGGTGTGTCGGGCTCTGGGCACCCCGTTCCCAGGTCGCCCGGTATGTGCAGGGTCGGGACGGGGCAGTGCCCCTTGGCACACAGCTCCGTGGGCCCCACGGCTTTTCCTTGGTTCCCGCTGAGGCCCGGCGCCGCCCCGAGGATCGCTGGCCACGGACAGGCAGGGACAGCACGGGGAGGTGTGTGGGGGCCGGGGGCTCCTCCCAGGAGTGGGGGCGAAGAGCCCCCCAGGTGAGGAGACCTCCCCAGGCCTCCTCCATCCAGCTGCACGGGCACGCAGGATGGAGATCCAGGAGCCGGGAGGGGCAGCGGGCACAGAGCTGTGGCGGGGAGAGGACGTGTCCCTCGTAGGGACTGGGACAAGTGGGGTGCCGCCCAGGAGCGGAGACGGGGCTGGGAGGAGGGGAGGGTTGCGGCCTCGGAGGCTGACGGGCTTCGTTTAGGGGCTCGCGGTTTATGCTCTGAGCAGATGAAGCTGGAGCGGAGGAGGGAGGCGCAGGGGGCAGAATGGGCGGAAGGACACACTTGGGGGCTGACGCGGCCCTCCGGTCAGGAGGGGCCAGCATGCCCGTCGGTTGGGGTGGAGGCGTGTGGCTCGAGAGCTGTTGGTGCGGCAGAGACGACAGGCTTTGGTCCTGGACAGAGGAGGGGCCGGTGGAGCGCGGGGCGTGGGCTCCAGCAGCGGCCGGGCAGTGAGCGCGGTCAGGGCTTGTCTGTGCCTCCCTTTTTCAGGGAGGCAGGACTCCGCGCCCTGTCCTGTCTCTGGTTCTGGCATCAGTGTACTGCCGGCCTCAGAGATGATTTGGGCAGTGCTTTCCTCTGTCTCCTGGGGCAGGCTTACAGAACTGGTATCCTCCTCGTTTTTTAGTTTGTTTTTGGCTGTGCTGGGTCCTCGTTGCTGGAGGGGGCCTGCTCTTAAGTTGCAGGGGGTGGGCTTCTGACTGCAGTGGCTGCTCCCGTTGCAGAGCACCGGCTCTGCGGTGCGCAGCTGCAGCGCTGGTGTCTGCCGGGCTCCGGAGCACGGGCCCAGTACTTGTGGCCTGTGGACTTAGTTGCTCCGTGGCCCGTGGGGTCTTCCCCGACCAGGGATCGAACCCGTGTCTCCTGCATGGGCACGTGGATTCTTTACCACGGAGCCACAGGGGAAGCCCCCAGAATTGGGATTCTTAAGTGTGTGATACAGTTCACCATGAATCCATCTAGACCTGGAGTTTCACTGTGGGAAGGTTTTTAAGGGTGAATTCAGTCCTTTTGATAGATTCAGGAAGTCAGGTTATTGGTTTGAGTCTGTGTTTTTTCATCACGGTAGGTTTGTTTGAGATGTCGCCTTACCTTTAAAGTCTGTAGGGTTTGTAGCAATGTGTTCTTTGTTTTTTCATTCCTTGTATTGGTAATTCGTGTCTGTTTCTTGGTGAATCTGGAGAATTTGATCAGTTTTGTTGGTTGTTCAAAGAACCAGTGTCTGACTTCGTTGACTTTTCTGTTTTCTTTTTCTTTCATCTTGGTCTTACTTTTATCATTTCCCTTTGCTTGGTATGGACTTAATTTGCTTTTCTTTTTCTAGCTTGAAAACAGAAGCTTAGATGATTGATTTTTTTCCTTCTTTTTCTTTGTTCTGTTTTTTGGCCCTGAGCCACGCGGGATCTTAATTCCCTGACCAGAGCTCCAACATGCACCCCCCGCAGTGGAAGCACAGTCTCAACCGCTGAAGCTTCAGGCCTTCTCTTCCAGTATAAGCACCTCATGCTTTAAGTTTATGTCTGAACTCACTGCTTTGGCTGTATGTTCCCCACAGACGTGATTTGTTGTGATTTCATTCAAGTTCAAAACATTTTTTAATTCTCTCCAGGTTCCCTTTTTGACCATGGGTATTTAAAAGTATGTTTGACCTACAGATATCTGGAGACTTTTCAAGATATTTTTCAGTTACTGGTTTCCAGGGTCAGAGAACATGCTTTGCATGCTTTCAGCATTTTGAAACTTTTGTTAAGATCTATTTTATGGCCCAGAATGTGGTCTGTCTCGGTCAGCGTTCCGTGTACACTTGAAAAGAATGTGTGCTCTCCTCTGTTGGGTGGAGTGCTGTGTGAGTGTCAGTTAGAAGATTTAAAAATCTTAAAAAAAAAAGGGGGGGGACACAAATGACTGACTTAGGAAACAGGAACAGGCTCATGGACTTGGAGAATGAGTTTACGGTTGGCGGGGGGGGGACAGGTGGAAGAGAGGGCTAGGCTGGGGGCTTGGGACTGACGTGCACACACCGTTTAGATAACTGGGCTTCCTCGGTGGTTCAGTGGCAAAGAACTCGCCTGCCAGTGCAGGGGACACGGGTTCAGCCCCTGATCCGGGAACCCCCCACGTGCCGTGGCGCAGTTAAGCCCCTGTGCCGTGACTACGAAGCCCACACACCCTCCAGCCCAAGCTCCACAACAAGAGAAGCCGTCACAGAAGTCCACTCAGCCCCACGCAGCAGCAGAGACCCAGCGTGCCCAGAAGGAGATGAGTGATGCAGAGCAAACTGGGGAGAAAGTGAACAGCTAACAGACTGACTGACTGTGTTACAGCGTAACACAGGAAACTCTGCTCGGTATTCTGTAATGACCTAAACGGGAACAGAATGTGAAGAGTATAGGTACATGTATATGTACAAAAAAATTTAAGTTAAGTTAGTTGACGTGGTGTTGGGATCGTCTGTATTCTTGCTCATTGGTTCTGTTGCTTACCGAGAGAAGATCGTTGAATCCTCTAAGTAGAATTGCGTATTTTCCTATCTCCCTTTATTTCTGTCAGCTTTTGTTTATATATTTTGAAGCTTGGTTTCAGATGAACAGGCATGTTGAACTGTGCTGCCGTCTTGGCCAGCTGACATTTTATTGTTACGCAGTATCTTCTTCCCAATAGTATTCCTTTTCCTAAGTGTACTTTGTCTGAAGTTGTTATAGCTACTGGAGTTTTCTTTTGATTGATAGTATATACATGGGATACTTCCCCCCTATCTTTTTACTTTTAACCTACTTCTTTTATTTTAAAGAAGGATTTGTGTAGACAGCCTAAAAGTTGGGTCTTGGTTCTTACCCAGTCTGACCATCTCTTCCTTTTAATTGGTGTGTTTAGATCATTTGTATTTAATGTAATTGTTGATATAATTCGATTTCCATCTGTTGTTCACTTGCTCAGTTGTGTCCAACTCTTTGCGACCCCATGGACTGCAGCATGCCAGCCCTCCCTGTCCATCACCAACTCCCGGAGCTTACTCAAATTCATGTCCATTGAATCAATGATGCCATCCAACCATCTCATCTTCTGTTGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCTCATAAGTCAGCTCTTTGCATTAGGTGGCCAAAGTATTGCAGCTTCAGCATCAGTCCCTCCAGTGAATATTCAGGGTTGATTTCCTTTATGACTGACAGCTTTGATCTCCTTGGAGTCCAGGGAACTCTCAAGAGTCTCTTCCAGCACCACAGCTTGAAATCATCAATTCTTTGGCACTCAGCTTTCTTTATGGTCCAACTCTCACATCCATACACGACTACTGGAAAAACCATAGCTTTGACTAGCCGGGCCTTTGTCGGCATAGTGACGTCTCTGCCTAATTGGCCGTCCAGGGCTTCTGCTCACCGTTACGTTGTTTTCTGTGAGTCCCTTCTGTTTACCCCTCTGTTCCACCCCTGCCTTCTTGGGGTATTTGAATACGGAGTTTGACCTGTTGCGCTTGAGATGCCTGTGGGGTGTCGAGGCGGGCTGCCTGCTGTGGCTGTCTCCTGGCCAAGGCCTCCCTGAGCTGGTGGGGCCTCTGAGCTCTGAAGCAGGGTCTCCGTGTCCCTGGAGATGCAGGTGCGTCCTGGGCAGTGGCCCGGCTCCTGTGCCTGGGTGCCATTGGGGCTGCTCCTTGGAAAGACAGCCTGGTCCTGAAGAGGACAAGGGCCAGTGGGTGAGGGTCAGGGTCTCGGGGGTGGAGCTCGGTGGAGTGTGGGGGCTGGGACGCCGCACTGTGACGCCCCTTGCCTTCTGCCTCAG
Seq C2 exon
ACAGCCGAAGAAGGGCGGCAAGCAGGCATCGGCCTCCTACGACTCGGAGGAAGAGGAGGAGGGGCTGCCCATGAGCTATGATGAGAAGCGGCAGCTGAGCCTGGACATCAACCGGCTCCCTGGGGAGAAGCTGGGCCGCGTGGTGCACATCATCCAGTCGCGGGAGCCCTCGCTGCGGGACTCCAACCCCGACGAGATCGAGATCGACTTCGAGACCCTGAAGCCCACCACGCTGCGGGAGCTGGAGAGATACGTCAAGTCTTGTTTACAGAAAAAGCAAAGGAAGCCGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010582:ENSBTAT00000013992:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.929
Domain overlap (PFAM):
C1:
PF112443=Med25_NR-box=PU(50.0=40.0)
A:
NA
C2:
PF112443=Med25_NR-box=PD(48.3=29.3),PF084185=Pol_alpha_B_N=PU(31.4=37.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development