DreINT0038115 @ danRer10
Intron Retention
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18232566-18233160:-
Coord C1 exon
chr21:18232943-18233160
Coord A exon
chr21:18232850-18232942
Coord C2 exon
chr21:18232566-18232849
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
GTGCTTGGAACTTTTCTCAGGCA
3' ss Score
5.11
Exon sequences
Seq C1 exon
CTGAAAGCCGTCCACGAACAGCTAGCTGCTCTTTCTCAGGCCCCTGTAAGTAAACCAAAGAAAAAGAAAGAGAAGAAAGAAAAAGATAAGAAAAAGAAAGAGAACAAGCACAACAAATCCAAGCCAGAGGAAAAAGCCAAGCCGGGACAGCCACCGAAACCAGCCCAGCAGAAAAAGGGTCCCACCAGAAAGGCTAACAGCACTGTTCCAGGAAACAG
Seq A exon
GTTTGCTGCTTTTGTCTTATTTCAATAAACTGAATGGGAAATGATCAGTTGAAGTCTAAAGTGTTTCTGTTGTGTGCTTGGAACTTTTCTCAG
Seq C2 exon
GCAACCAAAGAAGGGTGGCAGAGGGCCAGGCTATGAGTCTGACGAGGAGATGTCGCTCCCCATGACGTACGATGAGAAACGGCAACTGAGCCTCGACATTAACCGGCTGCCTGGAGAGAAGCTGGGTCGGGTGGTCCATATTATTCAGTCCAGAGAGCCTTCGCTGCGTGATTCCAACCCTGATGAAATTGAAATAGATTTTGAGACGCTGAAACCTTCCACTTTGCGAGAGCTGGAGCGATACGTCAAGTCCTGTTTACAAAAGAAACAGAGGAAACCTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527:ENSDART00000135239:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCCAGAGGAAAAAGCCA
R:
GCCGTTTCTCATCGTACGTCA
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]