HsaINT0018496 @ hg38
Intron Retention
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr9:134036032-134040269:-
Coord C1 exon
chr9:134040034-134040269
Coord A exon
chr9:134036325-134040033
Coord C2 exon
chr9:134036032-134036324
Length
3709 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TGCTCTGTCTCCTGCCCCAGACA
3' ss Score
9.11
Exon sequences
Seq C1 exon
CTGAAGGCCGTGCACGAGCAGCTGGCCGCCCTGTCTCAGGCCCCAGTAAACAAACCAAAGAAGAAGAAGGAGAAGAAGGAGAAGGAGAAGAAGAAGAAGGACAAGGAGAAGGAGAAGGAGAAGCACAAAGTGAAGGCCGAGGAAGAGAAGAAGGCCAAGGTGGCTCCGCCTGCCAAGCAGGCTCAGCAGAAGAAGGCTCCTGCCAAGAAGGCCAACAGCACGACCACGGCCGGCAG
Seq A exon
GTGGGCTCCAGACCTGCTCGGGCTCCAAGAGCCCAGCGCTCAGCACGCCATGGGGGCTCATGTAGCAGCAGTGCTGGGATTGGGGGCTTTGTGCCTTGGCCACCTGGAAACCAGGGTGATGGGGGCAGGGAGACAGAGGGCCTGATGAGACCTGTGCTGGGAAGTCCGGGGGCCCAGGTGATGCTGCTCAGTTGTCTGCGGGGCTGGCCTGGATTCTGGGCATTGAAGCGCTGGCACGGCCTGGTCTCCACATCATGAAGCTTTTGGGATGTTTCTCTGGTCTGGGCCAAGGATCTTGACTAGGGGGAGTTGAACGCCCCGTTTTGGACTTGCCCATAGGCAGGGGGCAGGGATGGTGGAATCGTGCACAGCTGCATTCAGCCTCCTTCGGGAGCCCCTGCTGTGGCTGGGCACCACCCTGAGGAGCGTCTGCTAGGGACATGCAGGAGCCACAAAGCAGTGTGAGCTAGTAGGGAAGGAGCTCAGGCCCGGGATGGGAGCTCTCCTGGCCAGGTGGAAGGGAGGCTTCCCAAGGGGGAGGCAACAGCTGTGTGGGAGCAAGCTTGGCAGCAGAGGGCCAGGGAGGGAGTTCCAAGAACAGGGAACAACGGGTACAAAGCCACAGAGGCCAGTAGGACGTGTTCCTTTTGGGAATGAGGGCAAAGTTGGCACCACTGAAAAAGAACAAGTTGGGAAAAAAGGTGAGTTGAGGCTGCTGAGATCAGCCGGCTTTGTTTGAGGTGTTCATGCTTCCTTTTCAAGCAAATGAAGGAGAGTTAGGATTTAAGCTCAACATGATCAGATCCTCGCCACTATGGAGAATAGCTTAGTGGAAATCAGGAATGGAAGAAAGGATACCCCTTTGGAGGTTATGGTGGTTGTGCAGGCAAAAGAAATTGGTGTGGCTCTGGAGATAGACTACTTTGGGAGGCGGCATGGCCAGGCCCTGGTGCTTGGAGGGAGGAGGGGAGGAGCATGGGGGTCCTGGGTTTGGGGTTAGACAGCTGGGTCAGCCATTAATGAAGACAGCGAGTGGAATGGTCGGGATAGGTCTTTCCTTCCCTTATTTTCTCCCTCCCTCCCTCTCTCCTTTTTGGAGGCAGATGCAGAAATCCATTTTTCTTATACAGGTTGAGTATCCTTTATCTAAAATAAGGATGTTTCCAAAATAAAAGGTGCTTCTGATTTTGGATTTTTTCAGATTTTGGAATATTTGCATTATACTCCCCATTGAGCATCTCAAATCTGAAGCATCTCAAAACTGAAGCATCTCAAATCTGAAAATCTGAAATGCTCCAGTGAGCATTTCCTTTGAGCGTCACGTTAAGACTCAGACAGTTTCAGATTTTGGAGCATTTTGGATTTTTGGATTTGGGATACCCAGCTTGTACTATCTTTGTCTGTTTTTAGTGTCAGTATAATGCTGGCCTCAAAAATGAGTTGCAGCCTGGTGTGGTGGCTCCCACCTGTAACCCCAGCACTTTGGGAGGGCCAGGCAGGAGGATCACTTGAGCTCAGGAGTTAGAATCCTACTGTGTTGCCCATAGTGGTCTCAATCTCTTTACAAAAAAAAGTGTTGGTTGGGATATAATATTTGAGTGATTAGAGGCAAGTAAAAAGTGATTTGAGGCCAGGTGCAGTGGCTCACACCTGTAATCCCAGAAATTTGGGCCAACATGGTGAAACCCTGTCTCTACTAAGAACAGAAAAAATTGGCCGGGCTTGGTGACGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGACAGGAGAATCTCTTGAACCCGGGAGGTAGAGGTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTTGGCCTCAGAGAAAAAAAGAAAAAAAAGATTTGAAAGGTGTTGCCCCTCTTCTGTTTTCTGGAGTAAATGTATAGAATTGATATTAATACTTAAATGTTTGGTAGGATTCACTAGCAGAACCATCTGGGCCTGGAGTTTTGATTGTTGGAAGGTTTTTAATCATGAATTCAATTATTTTAATAGGTATAGGCTTATTAGATTATCAGTTTCTTCTTGAGTGAGTTTTAGAGGTTTATGCCTAAGGCGTTAATCCATTCCACTCGGATTGTCAAACTTATGGACATAAGTCTATTGGTTAGTATTTCTCTATTAGCCTTTTATTGTCTGTAGGGCCTGTAGTGATGTGTCTTTTTCATTCCTGATATTGGTAATTTGTGTCTTTTTTTCTTGGTGAATCTGGATAGAGACATACCAATTTTATTGATCTTTCAAAGAAACATAATTAGATTTCATTGATGTTTTTAAAAAAAATTTTTACTTTTATTTATTTCTGATCTTTACTGTTTCCTTTGCTTAGTTTAGACTTGGCTTCTTTTTACTTTTTAAGGTAGAAGATTAGATTACCGACTTGAAACCTTTTTTTAATTTTTTATTTTTTAAATTTTTTTGAGAAGGAGTCTGGCTGTGTTGCCTAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCAGGGTTCAAGTGATTCTCCTGCCTCAGCATCCCTAGTAGCTGGCATTACAGGTGCCCGCCACCGTGCCTGGCTCATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATTTGGCCAGGCTAGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCGCCCAGCCCTGCGTTGTCCTTTTTTCCTGAACATACTCCTTTTTCTGAAGTTTACTTTGTCTGAAATTAATATACCCACACCAGCTTTCTTTTGACTAGTGTTTGCATGGTATATTTTTTTCTCACTTTTTTCCTTTTAACCTACTTAGAACATTATATTTAAAGTGGCATTTGTGTAGACACTATGTAAGTGGGGTCTTCTTGTTTTTTTAATCCAACCTGAGCATCTCTTCCTTTTAGTTGGTGTGTTTAGACCATTTATATTTCTTTCTTTTTTTCTTTTTCTTGAGGCAGAGTCTCGATCTGTCGCCCAGGCTGGAGTGCAGGGACAAGATCTTGGCTCACTGCAGCCTCCGCCTCCCTGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGCATAGCTGGGACTACAGGTGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGTAGAGACGAGGTTTCACCGTGGTAGCCAGGATGGTCTCGACCTACTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTAGACCGTTTATATTTCACATAATTATTGATATAATTGGATTTCGGTCTCTCATTTTATTATTTTCTTTTTCCTCTGTGTTTTCTGTTCCTTTGTTCCCCCTTTTTTGCCTTCTTTTGGATTACCTGAATACAGAGATCATTTCTTGACCTGTGGAGTTTGAGACGCCTATGGGGTGTAGAGAGGAACGAACCTCTGTAATTGTTTCCTGGCCAAGGGCTGGAAACCCCGCAGCTGGGAGCGACTTTTCTAACCTTGGATTTTCTGCCTTGGGGCACCACTTTGGGAAGAAAGCTTGGTCCCAGAGAGCAGCCTGCTGTTGGGAGGAAGGGGTGTGTGCAGTGGGCTCCCACGGCAGGTAGACGGAGACTCAACACCACGTTGCTCTGTCTCCTGCCCCAG
Seq C2 exon
ACAGCTGAAGAAAGGCGGCAAGCAGGCATCTGCCTCCTACGACTCAGAGGAAGAGGAGGAGGGCCTGCCCATGAGCTACGATGAAAAGCGCCAGCTTAGCCTGGACATCAACCGGCTGCCCGGGGAGAAGCTGGGCCGGGTAGTGCACATCATCCAATCTCGGGAGCCCTCGCTCAGGGACTCCAACCCCGACGAGATAGAAATTGACTTTGAGACTCTGAAACCCACCACTTTGCGGGAACTGGAGAGATATGTCAAGTCTTGTTTACAGAAAAAGCAAAGGAAACCGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925:ENST00000303407:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084185=Pol_alpha_B_N=PU(29.6=34.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development