GgaINT0123975 @ galGal3
Intron Retention
Gene
ENSGALG00000002682 | BRD3
Description
NA
Coordinates
chr17:7844893-7845943:-
Coord C1 exon
chr17:7845708-7845943
Coord A exon
chr17:7845186-7845707
Coord C2 exon
chr17:7844893-7845185
Length
522 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATGCTTGCCAATCTCCCCAGGCA
3' ss Score
7.43
Exon sequences
Seq C1 exon
CTAAAGGCAGTCCATGAGCAGCTAGCTGCGTTATCACAAGCACCAGTGAACAAACCAAAGAAAAAAAAAGAGAAGAAGGAAAAAGAGAAGAAAAAGAAAGACAAAGAGAAGGAAAAGGAAAAGCACAAAGTAAAAGCTGAGGAGGAGAAGAAGCCTAAGGTGGCTCAACCACCGAAGCAAACCCAGCAGAAGAAAGCCCCAGCTAAAAAGGCAAACAGCACGACCACAGCTAGCAG
Seq A exon
GTGAGAGCTTGCCTCTTGCAAGTTGCCTTAGGTGGGAACACAAAAAGCTCTCAGCCCAGTTCTGTCCCTCCTGTTCCTGTTGTTCCCTGGTGAAGCTTGGTTGTCAGCATGGTTAACTCACCATCAAATAGTGTCTCAGTTACAGACAGCTTCAGGGAGTTTTCAAGTTAGGGCTGGCAGCAGAACCATCACATTTCTACTCTCTGACTCTTTCAGTATTCCTGCCCAGTCACTCTCAGATAAGGTTTTGACTTTTTACCCAGCCAGCAATAACATGCTATTTCATTTCTGCCCCCATGCTGCTTCTTCGGCTTGTCATGCCTCATAGCACTAAAATATAGTGGGAGCAGAACAGCTTATCTCAGATTTCTGAACTTTTGAAAAAGTTGTGGTGCTGTTCAAGCTATCTGGCTAGAGGTTCAAAGCCAGATGCATTGGGATGTTTATTACAAGGGGAGTAGAAGAAAGAGTTCATTGCTGCTATATACCCATGAATGTTTCCATGCTTGCCAATCTCCCCAG
Seq C2 exon
GCAGCCCAAGAAAGGAGGAAAACAGGCATCTGCAACCTATGATTCGGATGAGGAGGAGGAAGGCCTGCCCATGACCTATGATGAGAAACGGCAGCTCAGCTTGGACATCAACCGCTTGCCTGGGGAGAAGCTGGGCCGAGTGGTGCACATCATCCAGTCACGGGAACCTTCCCTCAGGGACTCCAATCCTGATGAGATAGAAATAGATTTTGAAACCTTGAAGCCCACAACGTTGCGAGAACTGGAGAGATACGTGAAATCTTGTTTACAGAAAAAGCAAAGGAAACCATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682:ENSGALT00000004226:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.949
Domain overlap (PFAM):
C1:
PF087385=Gon7=PD(47.2=53.2)
A:
NA
C2:
PF084185=Pol_alpha_B_N=PU(29.6=34.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGAGGAGAAGAAGCCT
R:
TCTCCAGTTCTCGCAACGTTG
Band lengths:
349-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]