BtaINT0026818 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047443 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr3:51574126-51575156:-
Coord C1 exon
chr3:51574867-51575156
Coord A exon
chr3:51574251-51574866
Coord C2 exon
chr3:51574126-51574250
Length
616 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TGTCTTTTCTTATTTTGTAGCTG
3' ss Score
10.48
Exon sequences
Seq C1 exon
TCTGCCAAAGAAGAAGAAACCACAGGTCTTCACTATGAAATCTGAAGATGAAGATAATGCAAAACCTATGAACTATGATGAGAAAAGACAGTTGAGTTTGGATATAAACAAACTCCCTGGAGATAAACTTGGGCGAGTCGTTCATATAATACAATCCAGAGAGCCTTCATTGAGAAATTCCAACCCTGATGAAATAGAGATAGACTTTGAAACACTGAAATCATCAACACTGAGAGAACTGCAAAAATATGTTGCTGGATGTCTAAGAAAAAGATCACTAAAACCTAATG
Seq A exon
GTATGTATTAGAAAGCAGTCTAATATTTGTGTTGTCCTCACTCTTTTGGTTGTACTCACTTTTTTTTTTCCTTCTAAATCACATAGGTAAGAGAACAATGAAGTCAAGAGAAGAACTTCATTCAGAGAAAAAACTAGAGTTGGAAAAGCGGTTACTGGATGTCAATAATAAGTTAAATTCTAGAAAACGTCAAACAAAACGTAGGTATCTTTTTTTTTTAATTTACTTATTTATTTTTGGCTGTGCTGGGTCTTAGTTGTGGTGCATGGGCTTTCTCTAGTTGCAGCAAGCTGGAGCTACTCTTCTAGTTGCGGTGCATGGGGTTCTCGTTGCGGTGGCTTATACTGGTGTGGAGGACAGGCTCTAGGCACGCAGGCTTCAGTAGTTGTGGCTCATTGGCTCTAGAGCTCAGGCTCAATACACAGTTGTGGTACACAGACTTAGTTGCCCCACAGCATGTGGAATTTTCTGGAACCAGGGATCAAACCTGTGTCTCCTGCATTGGCAGGTGAATTCTTAACCATTGGACCACCAGGAAAGTCCCAGTAGCAGTTTTTAAAATGTTCCTGTGACAGTTTAATATCTGCCATTTTTAATGTCTTTTCTTATTTTGTAG
Seq C2 exon
CTGAGAAAACTCAATCATCCAAGGCCATTGGAAGTGGTTCCCGACTGAGTGAAAGTAGCAGCAGTAGCAGCAGCAGTAGTTCATCAGAGTCTGAAAGTAGTAGCAGTGATTCAAGTTCTTCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047443:ENSBTAT00000004850:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.827 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAACCACAGGTCTTCACT
R:
CTACTGCTGCTGCTACTGCTG
Band lengths:
358-974
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]