HsaINT0018579 @ hg38
Intron Retention
Gene
ENSG00000137948 | BRDT
Description
bromodomain testis associated [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr1:91981268-91981755:+
Coord C1 exon
chr1:91981268-91981381
Coord A exon
chr1:91981382-91981617
Coord C2 exon
chr1:91981618-91981755
Length
236 bp
Sequences
Splice sites
5' ss Seq
AATGTAGGT
5' ss Score
5.12
3' ss Seq
TATGTTTCTCTGTTTTGTAGCTG
3' ss Score
9.65
Exon sequences
Seq C1 exon
CTAAGAAAATAATGATGTCCAAAGAAGAACTTCACTCACAGAAAAAACAGGAATTGGAAAAGCGGTTACTGGATGTTAATAATCAGTTAAATTCTAGAAAACGTCAAACAAAAT
Seq A exon
GTAGGTGGCAGTTTTTGTTTGTTTGTATGTATGTATGTATGTATGTAGAGACAGGGTCTTGTGATATTGCCCAGGCTGGTCTTGAACTCCTGGCCTCATGTGATCCTCCACCTTGGCCTCTCAAAGTGCTGAGATTACAGGCATGCGCGACCATGCCCAGCCTAGGTGGCAGTTTTTAAATGTTCCTGCAACTATTTAATTCTTCTGGCATTTTAATATGTTTCTCTGTTTTGTAG
Seq C2 exon
CTGATAAAACGCAACCATCCAAAGCTGTTGAAAATGTTTCCCGACTGAGTGAGAGCAGCAGCAGCAGCAGCAGCTCATCAGAGTCTGAAAGTAGCAGCAGTGACTTAAGCTCTTCAGACAGCAGTGATTCTGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948:ENST00000362005:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAATGATGTCCAAAGAAGAACTTCA
R:
CTGATTCAGAATCACTGCTGTCTGA
Band lengths:
244-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development