RnoINT0026475 @ rn6
Intron Retention
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3428701-3429075:-
Coord C1 exon
chr14:3428950-3429075
Coord A exon
chr14:3428884-3428949
Coord C2 exon
chr14:3428701-3428883
Length
66 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TAACGCTCCCTGTTTTGCAGTGG
3' ss Score
6.84
Exon sequences
Seq C1 exon
CGAAGAAGGTTGTCAGGTCTAAAGAGGAGCTCCATTCTGAAAAAAAGCTGGAGCTGGAGAGGCGGTTGCTGGACGTCAACAATCAGCTGAATTGTAGGAAACGGCAAACGAAACGTCCAGCAAAAG
Seq A exon
GTAGGTGGCGGTTTCTCCGCGCCCACCCGTGAGCCCTGACCGCTGTTAACGCTCCCTGTTTTGCAG
Seq C2 exon
TGGAGAAGCTGCCCCCGCCCCCGCCGCCGCCCCCGGAGCTGGCGAGTGGGTCCCGCCTGAGCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCTCGGGGTCCGGGAGCAGCAGCAGTGACTCGAGCTCCTCCGACAGCAGCGATTCAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073:ENSRNOT00000061538:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACGAAACGTCCAGCAAA
R:
GAGGAGCTCGAGTCACTGCT
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]