BtaINT0029080 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:18989689-18990770:+
Coord C1 exon
chr7:18989689-18989762
Coord A exon
chr7:18989763-18990577
Coord C2 exon
chr7:18990578-18990770
Length
815 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CCCATGCTCCCCTCCGGCAGGTA
3' ss Score
9.71
Exon sequences
Seq C1 exon
ATGAAGCCCACCTCAGGCCCCAGCCTGCTGCTGCTGCTTCTAGCCAGTCTCCCCATGGCCCTGGGGAACCCCAT
Seq A exon
GTGAGTAGTCACAGCCTGACCCCAAAAAAAGGCTGCTTCAGAGACGAGAGTGTGCATTTGTGGTATGCGGCCCTGCATGTGTAGGGCGTATGCGGTGATGAGTGATTCTGCAGGAGAGGTGATCTGGCGTCCTGGACATTTGACCGTCATAGATTCTGGGAGTTTGTAGTTTCAGGTTTTAAGGGTCTAGAGATTTCGCGTGGGTGTATGTGGCTGAGGGCGTGGATCTGGATCTGGGGTGCCACAGGTTTAGGGAGGAGTTTGGGATGGTCTTGGCTGCCCTGGTGGCTCAGCAGGTAAGGAATCCGCCTGCAATGCAGGAGACACAGGAGACGTGGGTTTGATCCCTGGGTCAGGAAGATCCCCTGGAGGAGGGCACCGGCAACCCACTCTGGTATTCTTGCCTGGAGAATCCCATGAACAAAGGAGCCTGGCCGGCTACAGTCTAGAGGGTAGCAAAGAGTCGGACACGATTGACGCCACTTAGCTCATAGCACATATGGTGTTCCAGGGCTGGGTGTTTAGAGACTTGGGGTGTTTAAAGATTTCGGGATTAGAGCTCCTGGAATAAGTGGATTCAGTGGTGAGTTTGGAAGTCTTGGAAGAGGTGGCACCTCTCATTTTGGTGTTGAGGAGTTGATGGGATGTGAAGCACCGCCCCTGCCTCCTCCTCCCCCGCCCCGCCCCCAGTTGTCTGCCGGTCTCCGGATCCCCTGTGAGACCAGGGACTGGGGCAGAGCGCTCACCCTGGGGAAGGGCTGGCAGCCCGGGCTTCCGGGGATGACAGCTCCACGCCCCATGCTCCCCTCCGGCAG
Seq C2 exon
GTATTCCATGATCACCCCCAACATCCTGCGTCTGGAGAGCGAGGAGACTGTGGTGCTGGAGGCCCACGGAGGACAAGGGACTATTCAGGTCTCGGTCACCGTCCACGACTTCCCGGCCAAGAAACAAGTGCTGTCAAACGAAAACACCCAGCTGAACAGCAACAATGGCTACCTGAGCACCGTCACCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280:ENSBTAT00000022979:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCTTCTAGCCAGTC
R:
CTTGATGGTGACGGTGCTCAG
Band lengths:
238-1053
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]