MmuINT0026789 @ mm9
Intron Retention
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57366116-57367559:-
Coord C1 exon
chr17:57367379-57367559
Coord A exon
chr17:57366306-57367378
Coord C2 exon
chr17:57366116-57366305
Length
1073 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CTCCCACACCCCACGGTCAGGTA
3' ss Score
5.44
Exon sequences
Seq C1 exon
AGAGAGGAGAGCCATATAAAGAGCCAGCGGCTACAGCCCCAGCTCGCCTCTGCCCACCCCTGCCCCTTACCCCTTCATTCCTTCCACCTTTTTCCTTCACTATGGGACCAGCTTCAGGGTCCCAGCTACTAGTGCTACTGCTGCTGTTGGCCAGCTCCCCATTAGCTCTGGGGATCCCCAT
Seq A exon
GTAAGTAGTTACCTTTTGGGGGTGCAGTTTCTTATACAATTTAGGAGTCACCTAGGTGAGTCACCTAGGAGTCACCCACTTGGGGGGAGACAGGGATGTTAAGAATTTGTGCTGGGGGCTGGAGGATGGCTCAGTGGGTATGAAGTCTTGCTGCATGGACATAAGGACCTTAACTCAAACTCCCAGCACCCACAGAAAAGCCAGGAGTGGCCTCCAGAGCCTGTAACCCCACACTGTGGGGCTGGAGACCAGATACTGGGGCTTGCTGACTGCCAGCCCAGTGCCAGGTTCAGAGAGAGATGTTGACTCAAGGTGTGGGGAGGGAGGGGCATAGAACAGGACACCGGACATCTTCCTGTGACGTGACATACATACATACATACATACATACATACATACATACATACATACATACATACAAACAGAGAGAAAGAGAGAGAATGTGAGTGTTTGGGTTGTCTTATGTTCATAGAACTCAGGTATTGTAGCATTGGTGTGCCTACTTATGAAGAAGAAGGTCTATAGATTTATGGTGTCTGTGATGTCTTGTGGTTTAGGCAATGGTAAGTTTTAAGATGTGAGGACTGGAGGGTTGTTGGGGTCTATAGCCCTTGTGTGGACTGTCAAAAGCCAAGCTCAGCATTGGGCCTGATTACATGGACCTGTCATCCTGTCCACTCTGGAAGCCCAGGCAGGAAGTGTACACATTCCAGCCAAGCCTGGGCTACAGAGTGAGTTCAGGGCTAGCCTGAACAACTTAGTGAGATGCTGTTTCCAAACAGAAAAGTGAGGAGAGGCTGAGGTATAGCTTAGTGGTAGAGAGAGCACTTTCTCAGTACAAGCAAAGTCCTTATGGCTGGTACCCAGTGCTGAAGCCAGGAAAAGACAGCTTCTAGTGGCTAAGGGAAAGTGGGCTGTGGTTTGGTACCTTCTTGTGTGGGGAGGACGTGGATCCAGGCATCTGCTCCAGCACTGAGAACTAGAACACGCTAGAACTAGGGACTGGGCCAGCCAGAGTGAGGGCTGAAGTCTCAGGCCTTGAGGTGACATCTGCTCCCACACCCCACGGTCAG
Seq C2 exon
GTATTCCATCATTACTCCCAATGTCCTACGGCTGGAGAGCGAAGAGACCATCGTACTGGAGGCCCACGATGCTCAGGGTGACATCCCAGTCACAGTCACTGTGCAAGACTTCCTAAAGAGGCAAGTGCTGACCAGTGAGAAGACAGTGTTGACAGGAGCCAGTGGACATCTGAGAAGCGTCTCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-C3:NM_009778:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATATAAAGAGCCAGCGG
R:
GCTTCTCAGATGTCCACTGGC
Band lengths:
350-1423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: