DreINT0003560 @ danRer10
Intron Retention
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55355638-55356030:-
Coord C1 exon
chr1:55355958-55356030
Coord A exon
chr1:55355834-55355957
Coord C2 exon
chr1:55355638-55355833
Length
124 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
GAAATGAATGTTTGTTTCAGCTA
3' ss Score
5.14
Exon sequences
Seq C1 exon
CGATGCACGGGTGTTTGGTGTGTGTAGCAGCGGTGATCCTCTCATTACCGCTGCTCTCTTTCTGTCAGCCGCT
Seq A exon
GTGAGTATTTATAATAATAGTAAGATTTTCATTACACTGAGAGCAGTTTTGTTTGTAAAAGTGTTATTCTGTGTGTTGAATGTGACTAACACTACAGTTGTTGTGAAATGAATGTTTGTTTCAG
Seq C2 exon
CTACATCCTCTCTGCCCCAAACAAACTGAAGCTGGGCTCTGCAGAGAGGGTGTTTGTGGAGGCGCAGGACTATGCAGGAGCCAGTCTCAACGTCAGGATCTCCGTCAGACGCTTTAAAGATGACCAGCGGGAAGTGGCCAGCACATCAGTCACGCTGACCGCTGGCAAAAACTTTCAAGAACTGGTGGAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198:ENSDART00000143793:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGGTGTTTGGTGTGTGTA
R:
AAAGTTTTTGCCAGCGGTCAG
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]