BtaINT0029323 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112315925-112318432:-
Coord C1 exon
chr8:112318350-112318432
Coord A exon
chr8:112316016-112318349
Coord C2 exon
chr8:112315925-112316015
Length
2334 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
TTCTTTGTTTTTATTTTCAGTGT
3' ss Score
10.63
Exon sequences
Seq C1 exon
ATACGGTGTGTGGACCATTCGAGCTAAATATAAAGAAGACTTTTCAACAACTGGAACCGCATATTTTGAAATTAAAGAATATG
Seq A exon
GTAATTTCTGATGATTAAAAGTTTACCTATGTAGAGTTAGCATTTTTGCAATAATTCTTTTCACGAATGAACTTAATGTAAAATCACTCCCAGATGAAGATGAGGCTGCTTGCTGGTATGGTTAGAAGTACTGATGGAGGCGGTGGGAGGATGGGCGTTGTCTGAATGCCTAAGCTCTGGGTGTAGCTGCCCTGTTGGCCTTAAACAAGCACGCCAGCCCTCTGGACTTGTCTTCCTCATCATAGAGCTCCAAGAGACCCAGCCCCCAGGGAGCTCGACTGGTTCAGGTCCTTTCCAGAATTAGGCTTTTAGGAGAAGCAACCAGAGTTGAGGTGAGCGGAACCTGGTTAGACTGACAGGTGATTTACTCACTTCATCCCAACCTGTCAGTGACAGAACAGGAACATCTGGATTCCTTACCCGAGTCCAGTGTTGTTTTCCTGCTGACTCAGAAATTCCTAATACATTGATCCAAAAATGTCAGATAGTCTTACTTTGAAATCAGTCATGTTAATGGGTTAATAATTAAACGTATAAACCGCTTAACCTTCCCATTTCTTGTAGTTGTTTACTAGAGTATCTGTGTGCTCTGATACAGAGTTTCTGTATCAGAAGTTTCTGTAATAAAAAACTTTATTTTGCTTGAAGTTATATTTTAATTCTCCCAATAGACTCATAATAATGTGGCGAATAAACACGTGAATTTTAACAATTAACAAACAGTGACAAAACAAATTTACTATGATGAAGCTCAACTTTAAAGATTACAGGCTCTAAACAACATATAATCCTAACTGGTCCCCTTTCCTCCAAGTGTTTTTGCTGCTTCTTTTACATATCTAAAATTTATCCACCTCTTATTATCTGGAGCCACACATTTATTTTATCACCAGGCTCCCTCATGGACTACTGCAAACCCACCCTCAACCCCCAGCTGTTATCTCTGCTTTGAAGCTATTCTTGCCGTCGTGTTATTTCATTATTGAAGTCCCCAACACCTCCTCATTGCCATCCCCTCCTCAGCCTCGTTTATGCCACTCCAGTAATGGTGACTTTGCATATGATCTGCCTACAACCCCCTCCCCCTCCCTCTCACCTAGCCAACTCCTACTCACCTTCAAGTCTCGGTTGAAAAACCATTTATCCAGTGATGTTTTCCCTGAATTCTCTTTCCTGGGAAGGACTCCCTGTACTCACTTATAAATATCAGCTTTCATAACGGTCCTAAGTGTTTGTGTAATTCTTTGCTTATGCTTGTCTTCCCTGCTCGACTATGAGCTCATTGAGGGTAGGGTTTGTCTGTCGTGTTCATGGGTATGTCCGTCTTGGTAGGAGTGTGCAGGCTACATGGTGGGTGCTGGATGAAACGATGAAATATTTTCCTCTACTTCATATCTTGGAGAGAACATATCTGCCTTGATCTTTAATAACATAGGAATGCAGCCCAGAGCAACAGATTGCATTGCTCTTTGACTTCTCTTTCCTCCCACATTGCAGGCAGATTCTTTACTGTTTGTATTATGCAGGAAGGCCCTTTCACCATCTAGAAAACATATAAGCCATATCTGACTCCATCTCACTTACTCTCATGTGACAGTCTTTATCTACAATATCAAGGTCATTCAATCACCCAATTTCTGTTAGGTGTTGTGCAGGTTAATAGAATCTGTAAACCTTACTACACAGGCTGTGTTAGAACAAAGAGAAGACCGTGCTTTTTTGGACAGGTGAAATTGTTTTCTCTTGGGCAATCAGAATACCAAAGAGACAGGGAAAAAACTCCTCCTTCCTTTCGGCCCTAATTTTTAATTTTGCATGAAGCTTTTTTCTTGTAGCCAATTGTAAGCTCTCGCTTTTGACTAAAGGGAGAGTTTTATGTTGGAATTTGGAGACTGGGTGGATTTAATCTATTAGACAAAAAATGGAAATGTTAAACAAGCAAGAAATTTCTTTTTCCATTTTCAATTTAATAAACATTTGTTGAACACATGCTCTATTTGTGGCTCATGAGAAGGTTGAGGGAGGAGACACGCAAAAATAAAGAGAATAGTCTTTTTTGTTTCAAGGAGCCCATCCTCTAGCGGAGGAAGTAGTCAGTTGCCTGTAAGTGCTGAAATCAAAGTTTAAGTCAAGTTCTTCTAGCACGTAGCGTATGAACTAACCTCTGATTGGTGGAACAGGAGGCTTCCCGAGATCCTGCTATTGGTGATGACAAGGTGGATGCTGCGCTGATGTCACGGCTTATCCAGCTATTCCAGAGATACAGTTGGTTGCTATGCTTTAAAGACTACTCTAATTCAAGTGGTAACGTTGCTTCTTTGTTTTTATTTTCAG
Seq C2 exon
TGTTGCCACATTTTTCTATCTCAATAGAACCAAAAAGTAATTTCATTGGTTATAAGGACTTTACTAATTTTGAAATTACTATAAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210:ENSBTAT00000016204:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.3=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]