GgaINT0126359 @ galGal3
Intron Retention
Gene
ENSGALG00000001565 | C5
Description
NA
Coordinates
chr17:9041592-9042226:-
Coord C1 exon
chr17:9042144-9042226
Coord A exon
chr17:9041683-9042143
Coord C2 exon
chr17:9041592-9041682
Length
461 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
TTTTCTACTCATTTTTTCAGCTA
3' ss Score
8.87
Exon sequences
Seq C1 exon
GTATGGAATTTGGAAGATTGAAGCAAAGTACAAGAAGAATTTCATAACTTCAGCTGTTGCAAAATTTGAAGTTAAAGAATACG
Seq A exon
GTGAGGCATGCCTGAGATGTGAATCTTCATTTTTATGTGCTTCTTCCATGACATTTTGATATGGCAGCCATGCAGTGTAGAGTAACAAAACTCACAAATGTTTAAGGTAGCACAGCCTACTTGAACAGCTATAGGATGCAATGCAGTGCCAAGTGGCAATATCAACTCAACACTGTATGAATACAACTTGCCTATAAATAGTTATTCTTCAGTGTGCTGGTAATTTTGACATGGTTGCACTCATGCAAAATGTGAAGAGAGGGCAGAAACAGATAACTTTGGGCTTTATAACTTGTGTTGCACTGTGGAGAAGCTGACAGCTTCATTTTTGGGCTGTAACATTATTCACATCACTTGAAACGTGATTCTTTGATGTGTATGTACTGGTAGCTTTCTGAGTACCTTTCTGTCATTGTTTAAAAGCCCATCAAAGTGCCTTTGTTTTCTACTCATTTTTTCAG
Seq C2 exon
CTATGCCAAGCTTTTCCATTGTCATAGAGCCAGAAAATAACTTCATTAGTTCTGATAAATTTGAGAACTTCAGGATTGCTGTGAAAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565:ENSGALT00000002379:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.3=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]