RnoINT0027438 @ rn6
Intron Retention
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14207509-14210136:-
Coord C1 exon
chr3:14210054-14210136
Coord A exon
chr3:14207600-14210053
Coord C2 exon
chr3:14207509-14207599
Length
2454 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATC
5' ss Score
4.14
3' ss Seq
GTCTTCATTTCTGTTTCCAGTCT
3' ss Score
8.65
Exon sequences
Seq C1 exon
GTATGGTGTATGGACAATTAAAGCTAAATATAAGAAGGATTTTACAACGACTGGAACTGCATACTTTGAAGTTAAAGAATATG
Seq A exon
GTAATCTCTAATGTTATTATATTATTATATCTGAGAGGGATTTTTGGGTACCTTTGGTATGACCGGAAGTAGCAGAAGAGAGTGGGGGGGTAGACAGACTACATAGTCACTGTTTCAGTAGCTGGTGCTTAGTTCTAGCTTGCCCCATGAGCCTTGAAGAAGCGAACCAATTTGCCTGGACTGTGTCCTGTCCTTTGTGACAGAGCTGGAAAAAGTGTGGTCCCTTGAGGAGCTTGGCTTGTTAAAGTCCTTTCCAGAATAATAGTCTCAAGATAAACAAATAATTAGATAAAGTGAGTGGAGCCTGATAAGGCTCCCTTAGAACTTAGACATGTTCATATTTTGAGATCGGTCATCTTACGGGGTCATGAATTAATTGTAAGTAGCTTAATCTTCCCATTTCTTGTAGGAGTTTACGCTGTGGGCTTTGCACTATGTGCTGGGCTTCTCTGCTTAAAGCCGCTCTTTCTTACCTCAGGAACTTTATGAGGAGGGTAGATAAATGCACGGTTCACAAACCGCGGGGAGACGGTGACTAAATCTGCCCTCGTGAAACTCAGCCTTGGGGACTGAACCCTGGCGCCTTGTTCTGAGCTCACTGCCTCCCGCCTTTGCTGCTCTCTGTGGGATGCAGATCCTGCCTGTATCTTATTATCTGCAGTTACGCCCATCCACTCACCTCACCAAGCTTATGCCGAACACTCCGGCAGCCCCCCTGGCACCGCTGGCTCTCGGCTGTCTTGCTGAGTATCGGTCAAACGATCTCAGGATGAACGTCACCATAATGTTCACACTGACAGCACCTACCACTGACTCTTCATTCCTCTTTAAATGAACTCTGCATCCTTAGCTTGATCTGGCCGGGGTTCCTCGAGAGCCTCATCTTATACTGCTCTTGGCCCCGCCCTTCCCACAGCTTTGGAAATATTGCACGTGGTGCTTTTCCATTTCCCTCCCGGCCCAGTCGATTCCGCTCGTGTCTCACGTCTCAGTTTGATGCTCATTTACTTAGAGACTCTCTCTTTAGATTTGCTTCCTAGGTAGCGTCTCAGCACTCTGTAGTCCGAGATTATTTACTTCCCCTGCTGTAGTTTGACTTGTGTGGTAATAAACTACTACCCTAGGGTTACTGTTGCTGTAATACCACCGTCAAAGTTCTTGGAGGCAAGAACCTGATGCAGAGGCCATGGAGGGGTGCTGCTTACTGACTTGCTCCTCGTGCCAATTCAGGCTACTTTCTTATAGAACCCAGGCCCATCAGCCCAGACGTGGTAGCTCTGGCACCTCCCCCATTGATCACTAATTGAATAAAAGCTCTACAGCCTTACCTACAACCCGATCTCACAGAGGCGTTCTCTCAATTGAGTATCCCGCCTCGCAGGTGACTATAGCTTGTATCAAGTAAACATAAGACTGGCCAGGTCTTCCTCCTGCAACAGACAGGAGCAAATCATAGAGACCCACAGCCAGACATTACTCAGAGAGTGAGTGAGAGGCCTTGGAATAAACAGCTCTACATGCAATGCCTCCATCCAATCCCTCCGCTCGGAGCTCAAGGAACCCTGCGGAAGAGGAAACAGAGTGTAGGACCGGAAGGGACGGAGGACACCAGGAAAACAAGGCCAAATCAACCGGGGATGAATGTGTGCTCTGCCCCACCTCCTTTCCGATTTTCAATTTAATAAACTCGTTGAATATAAATATTTAAGACTTACAAGAAGGATAAGAGGAATAGATAAACACAGAGAGACATTGAGAGACAAAGGCAGAGAGAGAGAGAGAGGAGGAAAAAAGTCCTTGTTCTGTTCTTAAGGAACTTCTACTGGAGAAAACAATCCATTGTCCATCACAATCACTATAAATAAAATATAAAGAAGTGATTTGGGTACATCAAGCCTGGATCCACTCTGATTTAGAGAAAGGGAAAGCTTATCAGAGATATTTGTTGTTGCTGCTGCTGCTGCTGGAGATGGAATGATGATGGTGATGATGATGGTGGTGGTGGTGATGATGATGGTGATAGTGATGGTGGTGGTGATGATGGTGGTGATGGTGGTGGTGGTGGTGGTGATGATGATGGTGGTGATGGTGGTGATGGTGGTGGTGGTGGTGGTGATGATGATGGTGGTGATGGTGGTGGTGGTGGTGGTGATGGTGGTGATGATGGTGGATGGTGGTGATGGTGGTGGTGGTGGTGGTGGTGATGATGATGGTGGTGATGGTGGTGGTGGTGGTGGTGATGGTGGTGATGATGGTGGTGGTGGTGGTGATGATGGTGGTGGTGGTGATGATGGTGGTGGAATAGAATGATGATGATGGGGATGGGGATGGGGATGAGAATGAGGATGAGGATGAGGATGATAACCTCTTGTCCAACCAGAAAGTCTAGCAGCCTGCTGTGCTTCAGAGGCCACTCCAGTTAAATGGTAACGCTGTCTTCATTTCTGTTTCCAG
Seq C2 exon
TCTTGCCCCGATTCTCTGTATCAATAGAACCAGAAAGCAACTTCATTGGCTATAAGAACTTTAAGAACTTTGAAATCACTGTGAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899:ENSRNOT00000025534:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.3=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]