MmuINT0076167 @ mm10
Intron Retention
Gene
ENSMUSG00000026874 | Hc
Description
hemolytic complement [Source:MGI Symbol;Acc:MGI:96031]
Coordinates
chr2:35039671-35043270:-
Coord C1 exon
chr2:35043188-35043270
Coord A exon
chr2:35039762-35043187
Coord C2 exon
chr2:35039671-35039761
Length
3426 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATC
5' ss Score
4.14
3' ss Seq
GTCCTTATTTCTGTTTTCAGTCT
3' ss Score
8.54
Exon sequences
Seq C1 exon
GTATGGTGTTTGGACAATTAAAGCTAACTATAAGAAGGATTTTACAACAACTGGAACTGCATACTTTGAAATTAAAGAATATG
Seq A exon
GTAATCTCTAATATTAATATATTATTATAACTAAGAGGGATTTTGCAGTACCTTTGGTATGACTGGAAGTACCAGAAGAGGGTGGGGGGAGACAGATGTACGTAGTCATTGTTTGAGTAGCTAGTGCTTAGTTCTAACTTGCCCTGTCAGCCTTGAAGAAGCCAACTGATCTGCCTGGACTGTGTCCTTCATGACATTGTTGAAAGAAATGCAGTCCCTTGAGGAACTTGGCTTGTTAAAGTCCTTCCTAGAATTATAGTCTTGAGATAAATAATTAGATAAAGTGAGTAGAGCCCGATAGCTCACTTAGACCTTGGACATACTCCTATTTTGAGATCGGTCATATTACTGGGTCGTGAAGTAACTACGAGTAGCTGAATCTCCCCATTTCTCATTAGTTTACTCTAGGGGTGTTGGGAGCCGCCCTCACATTTGCCATTACAAGATGGCGCTGACAGCTGTGTTCTAAGTAGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCGCCATGTGTTCTGCCTTTCTCGTGATGACAACTGAGCCGATGGGCTGCAGCCAATCAGGGAGTAATGCGTCCTAGGTGGAGGATAATTCTCCTTAAAAGGGACGGGGTTTTTGCCATTCTTTCTCTTGCTTTCTTGTTCTTGTTCTTTCTCTTGCTTTCTTGTTCTTGTTCTTTTTCTTTCTCTCTCTTGCTCTCTTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTGCCGCAGAAGATTCTGGTTTGTTGCGTTCTTCCTGGCCAGTCGCGAGAACGCGTGTAAGATAGGGGGTCTGTGCTGTAATCAGATTGGGCGTCTCTGCTTAAAGCCACTCTCTCTTTCCTCAGGAAGATTCATAAGAAGGGCAGATAGATGCACTGTTAACAATCAGCAGGGAGACAGTGACCAAATATGCCCTCGTGGGACTCAGCCTTGAAGATTAAGCCCGGTGCCTTGTCCTGCCTGACCTCACTGCTTCCTGCGTTTGCCGCTTTCTGTAGGCATGCAGATCCCTCCTGTCTCTTACTCTCTGTCTTTGCCCCCAATCCACTCACCTCACCAGGTTTACGCCAAACAGGACAGCAGCCGTCCTAGCATCGCTGTTTATCAGTCAAACCATCTCAGGATGACAGTCATCATAATGATGATGCAGAAAGCACCTACTACTCGCTCTTTATACCTCTACATCCTTAGCTTGAATTGCCCCTGCTCCTTCTTCAGCCTCATTTTATATCACACTTGCCCCCCCCCCCCGGCTTTGGAAATATCACACGTGGTGTTTTTCCATTTCCCTCCTGGCCCGGTCAATTTCGCTCACATCTCGTGTCTCAGTCTGATGTTCATTTACTTGGAGAATCTCTCTTTGGATTTGTTTCCTGGGTAGCATCTCAGCACTCAGTGTACTCTGAGATTATTTCCTTACCCTGCTGTAATTCCACTCGTCCTACGGCTACTGTTCCTATGGTGACACACCACAGTCAAAGCAATGTGGGGAGGAAAGGGTTTATTCGGTTTACACTTCCACATCAAAGTTCCACATCAGGACAGGAACTCAAAACAGGGAAGGAACCTGGAGGCAGGAACCTGATGCAAAGGCCATGGAGGGGTGCTGCTCATTGGCTTGCTTCTCACATCAATTCAGTCTGCTTTCTTATAGAACCCAAGGCCATCAGCCCAGGGGTGGCACCATCCACAGTGGGTGGGGCTCTGCCCCATCAATCACTAACTGAAAAAAAAAAAACTCTACAAGGCATTTTCTCAACTGAGTGTCCCTCCTCTCAGGTGACTATAGCTGGTATGGAGTTGACATAAAACTAGCCAGTACTTCCTCCTGCAGCAGATGGGGGCAAATAATAGATACTCACAGTCAGGAATTACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTGGAATACACAGCTCTATAGGAGATGTCTCCATCTAATCCCTCCCCTCAGAGCTCAGAGAACCCTACAGAAGAGGAAGCAGAAAGAATGTCAGACCAGAGGGGATGGAGGACACCAGAAAAATAAGGCCCACTAAGTCAACATGAGCAGGGCCTGCATAGGTCTGCACAGGTCCTCTGTGTGTATGGATAGACTGTAGCCTTCAGCTTAGTATGTTTCAAGACTCCTGAGTGTGTGAATGTGTGGGTCTCTAATTCTTGTGCTTTCTCTTGGGCTCTTTTCCTCTGTTGGGTTGCCTTGTCCAGCTTTGATGTGATGGTTTTGTTTTTTTCTTGTTATATCTTATATTATTATTATCCCTTAGAAGCCTGTTCTTTTCTAATGAGGAGGAAAAAAGGGAGTGGATCTGGATGGGAGGGGAGTGGGGAGGAACTGGGAGGAGTAGAGGGCGGGGAAACTATAATTGGGATATATTGTATGAAAAAAGAATCTATTTTTAATAAAAGACAAAAAACCTAACTAGCACAAGTACTATGGCCAGAAGTAGCTTGCGGGGGGGGGGGGTTGATTTTTTTGGGGGGGGGGCTAGACTTCTAGTTCACAGTCACTGAGAGAAGTCAGGACAGGAACCCACACAGAACCTGAAGCAAAGGCTATGGAAGAACACTTTGGCGCATTGTTTTTCAAGACAGCATTTTTTTCTGTGTAGTCCTGGTTGTCCCGGAACTCACCCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCTGAGTACTGGGTTTAAAGGTGTGTTCCACCACCACCTAGTGTGGAAGGACACTTCTTGCTGGCTTGCTTACAAGCTCATGTTTGCTAGATTTCTCCACAGCCCAGGACTACCTGCCCAGGGAATGGTGCCGCCCACAGTAAACTTCTGTATTAATCGTCGATTAGGGCAATTCTCCATAGACATGCACAGAGACTACGACAGCACTTAAATACTGGCTAGATTTGATCTACTAATGAGAGATGCTCAATAAACCCACATTTTCATTTCCTATTTTCAATTTAATAAACTCATTGAATAAATATTTAAGACTTATAAGAAGGATAGGACTTACAGAGTGAGAGACAGAGAGAGAAACAAAGACAGACAGAGACAGACAGACAGAGAAGTCCTTGTTCTGTTTTTAAGGAATTTCTATTCTACTGGAGAAAACAATTTATTGTCCATTATAATTAGTATAAACAAGATATAAAGAAGTGATTTGGGTACATCAAGCCTGGATTCACTCTTGATTTGGAGAGAGGGAAAGCTTATCAGAGATATGGTTGTTGTTGTTGTTGATAATGGTGATGATGGAGATGTGATGATGATGATAGTGGTGATGATGATGTTACCTCTTGTCCAATGAGAAAGTCTCGCAGCTTGCTGTGCTTCGAGGCCACTCTAGTTAAATGGTGACACTGTGTCCTTATTTCTGTTTTCAG
Seq C2 exon
TCTTGCCACGATTCTCTGTTTCAATAGAACTAGAAAGAACCTTCATTGGCTATAAAAACTTTAAGAACTTTGAAATCACTGTGAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026874:ENSMUST00000028233:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.3=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types