BtaINT0031076 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103453088-103453622:-
Coord C1 exon
chr11:103453414-103453622
Coord A exon
chr11:103453191-103453413
Coord C2 exon
chr11:103453088-103453190
Length
223 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGC
5' ss Score
4.37
3' ss Seq
CCTCGTCTTGTCTCCGGCAGCTG
3' ss Score
9.71
Exon sequences
Seq C1 exon
GCGTAAAGCAGAGGAAGACCGGATCCGCAAGGAGGAGGAGAAGGCGCGGCGGGAGCTGATCAAGCAGGAGTACCTGCGGCGGAAGCAGCAGCAGATCCTGGAGGAGCAGGGCCTGGGCAAACCCAAGACCAGGCCCAGGAAGCCGCGGCCCAAGTCCGTCCACCGGGAGGAGCCAGGCAGCGACCTGGGACCTAAGAGCGCCTCCCCCC
Seq A exon
GTAAGCAGGGCCGGGGGAAGGGCCGGAGGTGGTGTGTGGGCCCTGCCCCTCCGCTCCCCGCCGCCCCTCCGGCTGTCAGCTCCCACTTCCCTTCTCCAAAGTTGGGGTCGAGCACTGGCATCCTCCGGTGCTGAGAGGCGGCGGGCCCTTCCCACCCCCGTACAGACGGCTGGTGTGGGGGACGCGCGTCTCACGGAAGCGCGCCTCGTCTTGTCTCCGGCAG
Seq C2 exon
CTGATAACCTGAGCCGGGCCCAGTCGGGCTCCAGCCTGTCGTTGGCCTCCGCAGCGACCACAGAGCCCGAGAGCGTGCATTCGGGGGGCACGCCTTCGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008:ENSBTAT00000007892:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAAAGCAGAGGAAGACCGG
R:
CCCCGAATGCACGCTCTC
Band lengths:
294-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development