RnoINT0028763 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3382506-3383085:-
Coord C1 exon
chr3:3382877-3383085
Coord A exon
chr3:3382609-3382876
Coord C2 exon
chr3:3382506-3382608
Length
268 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGC
5' ss Score
4.37
3' ss Seq
CCATTTTCTTGTTTCTGCAGCAG
3' ss Score
9.33
Exon sequences
Seq C1 exon
GCGTAAGGCCGAAGAGGACCGATTACGGAAGGAGGAGGAGAAGGCGAGGCGAGAGCTCATTAAACAGGAGTACTTGCGGAGGAAGCAGCAGCAAGCCTTGGAGGAGCAAGGGCTTGGCAAACCTAAATCAAAGCCTAAAAAGCCTCGGCCAAAGTCAGTTCACCGGGAGGAGTCTTGCAGCGACTCTGGCACCAAGTGCTCTTCTACCC
Seq A exon
GTAAGCACCCATCACCCAGCAACTGCTGTGCTTGCTGCTTAGTGCTGGGCTTCCGAATCTCACTGTGAGGGGCGGGCAGGGGGTGGGGTCATCCCTTTAAACAAACCTAAGGAATTGAGACCAAACGTGATGCTCTGAGGTGGCAAGGGACACCCAGGGTTTGGTGGAGAGTTGTTGGGGTAGAGGGAAGCCTCGTAACAGTGAGTTAGGATGGCGGGGATGGGCCTGGTAAACCTCTTCACAGTTTGCCATTTTCTTGTTTCTGCAG
Seq C2 exon
CAGATAACTTGAGCCAGACTCACTCTGGCTCTAGCCTGTCCTTGGCATCTGCAGCAACGACAGAACCTGAAAGTGTTCACTCGGGGGGCACACCTTCTCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTACGGAAGGAGGAGGAGA
R:
GGTGAGAAGGTGTGCCCCC
Band lengths:
292-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]