GgaINT0125780 @ galGal3
Intron Retention
Gene
ENSGALG00000001692 | CAMSAP1
Description
NA
Coordinates
chr17:8898950-8899345:+
Coord C1 exon
chr17:8898950-8899158
Coord A exon
chr17:8899159-8899242
Coord C2 exon
chr17:8899243-8899345
Length
84 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGA
5' ss Score
5.82
3' ss Seq
TTTTGTCTTCTTTTTTGTAGCTG
3' ss Score
9.86
Exon sequences
Seq C1 exon
TCGCAAAGCTGAGGAGGACAGAATACGCAAGGAAGAGGAGAAGGCTCGTAGAGAACTTATCAAGCAGGAATATCTAAGGAAAAAACAGCAGCAAATCTTGGAGGAGCAAGGGCTTGGAAAGCCCAAATCAAAGCCCAAGAAACCCAGGCCAAAGTCGGTCCATCGTGAGGAATCTTACAGTGATTCAGGGACAAAGTGTTCTTCTACTC
Seq A exon
GTAAGAATTTTGGGTGGTTTGTTCTCAATGGGTCTGGTGATCTGCTTTAACAAATGTATTCACGTTTTGTCTTCTTTTTTGTAG
Seq C2 exon
CTGATAATTTGAGCAGTGCTCAGTCTGGTTCCAGTCTTTCTTTGGCCTCAGCAGCAACAACGGAACCTGAAAGTGTACACTCTGGTGGCACACCATCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692:ENSGALT00000002593:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCAAATCTTGGAGGAGC
R:
TTGCTGCTGAGGCCAAAGAAA
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]