MmuINT0028477 @ mm10
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25935462-25936058:-
Coord C1 exon
chr2:25935850-25936058
Coord A exon
chr2:25935562-25935849
Coord C2 exon
chr2:25935462-25935561
Length
288 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
ATTTCTTGTTCCTACAGCAGATA
3' ss Score
5.11
Exon sequences
Seq C1 exon
GCGTAAGGCTGAAGAGGATCGACTACGGAAGGAGGAGGAGAAGGCAAGGCGAGAGCTCATTAAACAGGAATACTTACGGAGGAAGCAGCAGCAGGCCTTGGAGGAGCAAGGACTTGGCAAACCTAAATCAAAGCCTAAAAAGCCTCGGCCAAAGTCAGTTCACCGGGAAGAGTCTTACAGCGACTCTGGCACCAAGTGCTCTTCTACCC
Seq A exon
GTAAGTGCCCAGCCCCAGCCCCAGCCCCAGCCGTGTGCCATGCTTGCTGCTCAGTGCTGAGTGCTTTATCTCACTGGGAGAGGGTGCAGGGGAGGGGCCATCCCTTAAACAGGCTTAAGGGGCTGAGACCAAATGTGATGTTCCAAGATGGCAAGGGACAGCCAGGGTTTGGGCAGAGAATTAATTGTTGGGGGTTGTAGAGGGAAGCTCCATCACAGTGTGTTAGGATGGCAGGGATGGGCCTGGTAAACTTCTTCACAGTTTGCCAATTTCTTGTTCCTACAGCAG
Seq C2 exon
ATAACTTGAGCCAAACTCACTCTGGCTCCAGCCTATCCTTGGCATCTGCAGCAACAACAGAACCTGAGAGTGTTTATTCGGGGGGCACACCTTCTCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933:ENSMUST00000114167:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.971
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTAAGGCTGAAGAGGATCG
R:
CCCCCGAATAAACACTCTCAGG
Band lengths:
293-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types