BtaINT0031080 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103474157-103475328:-
Coord C1 exon
chr11:103475066-103475328
Coord A exon
chr11:103474319-103475065
Coord C2 exon
chr11:103474157-103474318
Length
747 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ACTGCTGCTTCTGCCCACAGAGC
3' ss Score
11.08
Exon sequences
Seq C1 exon
ATGACATCCCCGAGGACCTCAGGGACCCCTTCTACATCGACCAGTACGAGCAGGAGCACATCAAGCCTCCGGTCATCAAGCTCCTGCTGTCCAGCGAGCTGTACTGCCGCGTGTGCAGCCTCATCCTCAAAGGGGACCAGGTGGCCTCCCTGCAGGGACACCAGTCTGTCATCCAGGCCCTGTCCCGGAAAGGGATTTACGTGATGGAGAGCGACGACACCCCTGTGACGGAGCCCGACCTCAGCCACGCGCCCATCAAGATG
Seq A exon
GTGAGTGGCCTGGGCGGTGGGGGGCAGCTGGGGGGCGGCCGCTGTGTCCCTGCAGCGCAGCGGAGTTGCCCCGAAAGTTTGGGCCTGAGACCGCCTTCTCTTGGTGGGATGTGGCTGGGCTGGAACAGGGTGGGGGCGGCTTCCCCCAGTGTGTCCCCAGGGCAGTGCTGCCCCACCCTGGCTGTGGTAAACCGAGTTGCTTTCAGAGGTGGCGACATGGAGTTGTGGAGCCCGCTCTGAGATTGTTTCACGTCTAACTTCTAAGAATTTTCGTGCCAAAATAGACGCGCCTCTCCCCCCGAGTGTCCCCCTCCCCATCCTTCTCTGCAGCCGCTCACCAGCCTGGCGTTTCTGGGCCAGGCTGCTCCAGGTCGAAGCCACCTCCTGGTGTCTCCCACGTGGCTTTAGCTTAGCCTGTTCTTGGGTGTTTTGCATCCTCTGGTTTTTGGCCTGGCTGGGTGTGTTTCAGGTTGGGAGGATGTTACGGGTTCCGGGAAAAAAGGGCTTCAAGGTGTGAGTTCAGCATGCAGACCCCGGACTGCCTGGGACCAGTGGTGGTCACGTGGCCTCGGGCCTGTCTCGTGTCTTCTCCCATGGCTGAGCTCTCACGGGGTCCTCGGAGAGGAGGACGGGGGGCCAAGCTGACCTGACCCCGAGGAGGGCTCCTGTGTGGGTGTAGGGAGGGTCTCCGCCTGACCCTGGGCTGTGGGGCAGGGGAGGGTGACCGACTGCTGCTTCTGCCCACAG
Seq C2 exon
AGCGCCCACATGGCGATGGTGGACGCCCTCATGATGGCCTACACCGTGGAGATGATCAGCATCGAGAAGGTGGTGGCCAGCGTCAAGCGCTTCTCCACCTTCAGCGCCTCCAAAGAGCTCCCATATGACCTTGAGGATGCCATGGTCTTCTGGGTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008:ENSBTAT00000007892:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0030726=CH=PU(6.2=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCAAGCCTCCGGTCATC
R:
AGACCATGGCATCCTCAAGGT
Band lengths:
355-1102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development