RnoINT0028767 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3413579-3414759:-
Coord C1 exon
chr3:3414497-3414759
Coord A exon
chr3:3413741-3414496
Coord C2 exon
chr3:3413579-3413740
Length
756 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ATTGCTGTCTCTGTTCCCAGAGT
3' ss Score
9.62
Exon sequences
Seq C1 exon
ACAACATCCCTGAGGATCTCCGAGACCCGTTTTACATCGACCAGTATGAGCAGGAGCACATTAAGCCACCTGTTATTAAGCTGCTCCTGTCCAGTGAGCTGTACTGCCGTGTCTGCAGCCTCATCTTGAAAGGGGACCAGGCAGCTACCTTGCAAGGACATCAGTCTGTCATCCAGGCCCTGTCCCGGAAGGGCATCTATGTGATGGAGAGTGATGATACCCCTGTGACAGATGCTGATCTCAGCCAGGCACCTATTAAGATG
Seq A exon
GTGAGTGCCTGACAGGCATTCCTCAGTGCCCTGCCGTTAGGTGACAAGATGGTGAGGTTTGCCCATGTATATTGGTGGACCTTAATGACACAACTACCTTTTAAAGAATGTCATCATGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGCCCTGGGTTGGGTCCCCAGCTCCGAAAAAAAGAAAAGGGAAAAAAAAAAAAAAAGAATGTCATCATTGTGGAAAGAGCATTTTGCTTTTGTGTTGTTTCTCACTGTGAAGATGTAAGTGTGGCAGTGTGCACCACTGCAGAGTCTTTCCCTGTCCTCAGAGGCTGTGCCTCTGCACATTAGCCCAGCGCCTAGCCAACGCTGCCCTTGCACTGCTCTTCTTAGCTTGTTCTTGGCATTTTGTATGCCATGGCTATTTTCCCTCAGTTTAAGGGTGATGTGTGGGTGAAGAGAAAGCTCTGAAGAGACTAAAGGTAGGGTGTGATACAAGGAGAGCCCTGGTGCCATCCCAGAACCTTTGGAGGCAGAGGAAGTGGGCAGCCTCTTTCCAGAGCTTTTTTCCAGAGCTACCGAGGAAACCTAAGTCTGCTGGCAAGAAACGAGAACCACAGACCATTATTGCATGCTGGAGCAGTGTCAGGGGTGGACAGGCCAGCCAGTACTGTCCTTTGGGGGAAGGCAAGGCAGAAAGTTTCTTGCATTGGGACCTGCAAGATGTGTAGGATGCTGATTGCTGTCTCTGTTCCCAG
Seq C2 exon
AGTGGCCACATGGCGATGGTGGATGCCCTGATGATGGCCTATACTGTGGAGATGATCAGCATTGAGAAGGTGGTGGCCAGTGTCAAGCGTTTTTCTACGTTCAGCGCCTCAAAAGAACTTCCTTATGACCTTGAGGATGCCATGGTGTTCTGGATCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCTCCGAGACCCGTTTT
R:
GAAAAACGCTTGACACTGGCC
Band lengths:
346-1102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]