GgaINT0125769 @ galGal3
Intron Retention
Gene
ENSGALG00000001692 | CAMSAP1
Description
NA
Coordinates
chr17:8887237-8887850:+
Coord C1 exon
chr17:8887237-8887499
Coord A exon
chr17:8887500-8887688
Coord C2 exon
chr17:8887689-8887850
Length
189 bp
Sequences
Splice sites
5' ss Seq
ATGGTTAGC
5' ss Score
3.16
3' ss Seq
TCATTGTGTTCTTCTTTTAGAGT
3' ss Score
10.82
Exon sequences
Seq C1 exon
ATAACGTCCCGGAGGAGCTGAAGGACCCGTTCTACATAGACCAGTATGAGCAGGAGCACATCAAGCCTCCCGTCATCAAGCTGCTGCTGTCCAGTGAGCTGTACTGCCGTGTCTGCAGCCTGATCCTCAAGGGCGACCAGGTGGCAGCGCTGCAGGGCCACCAGTCGGTGATCCAGGCACTGTCTCGAAAGGGGATTTACGTCATGGAGAGCGATGACACACCTGTGTCTGAATCTGATCTGGGCTGCGCACCAATCAAAATG
Seq A exon
GTTAGCTTAATTAAATCCACCTAATGATCTTTTTACTTAACGCTATTTAAAATAGTTCATGGAAGGAAGGGGTTTTCATTTCTAGGCCACTAACCTCGGGAATTTTTCACTGTAAATACACTTAGAACACACAGAGACTTTTTTCCTAAAGGATTTTGGTTTTTAGTACTCATTGTGTTCTTCTTTTAG
Seq C2 exon
AGTTCTCATATGGCAATGATTGATGCCCTTATGATGGCCTACACTGTAGAAATGATCAGCATTGAAAAGGTGGTCGCTAGTGTCAAGCGTTTCTCTACATTCAGTGCCTCAAAAGAACTGCCCTATGATCTGGAGGATGCAATGGTTTTCTGGATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692:ENSGALT00000002593:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0030726=CH=PU(6.2=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCCAGTGAGCTGTACT
R:
AGCGACCACCTTTTCAATGCT
Band lengths:
257-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]