BtaINT0031087 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103457695-103458635:-
Coord C1 exon
chr11:103458502-103458635
Coord A exon
chr11:103457780-103458501
Coord C2 exon
chr11:103457695-103457779
Length
722 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGTTTTCTCCAAACCGCAGACC
3' ss Score
9.37
Exon sequences
Seq C1 exon
ACCAGCAGCTGGTGATTTTTCTCTCCCATCCTCTCTGTTTAGGGGGAAGGGAGCCTCAGCTTTTAGCCCATCACACCCTTTACTGCCACTGAGACAGAAGCAGCAGAAGACGGTGCAGGGAGAGGACCCCCCAG
Seq A exon
GTGAGAAGCACCACCCCACCCCCGCCACCCCCGTCCCTCTCTGGAGGCCATTACATCGTAGTTCCAAAATGAACAGATTGGTCATGATGTGGCGATGTTGGTTACGAAGACTGGCGGCATGCTTTTTGCGTTTTATTCATGTACCTTACAATTTATAGTCTGTACAGTGGCCATATTAAACCTAGTGAATTCCATAAAGCATGGCAGTACATCGTGTCAAAAATTTACACTTTGACGTTCACTGGTTCTTTTAATTGACATTGACATCACTTATTGATAAAGTGAAAGTGAAAGTCACTCAGTCGTGTCTAACACTTTGCAGCCCCATGGACTATACAGTCTATGGGATTCTCCACACCAGAATACTGGAGTGGGTAGCCTTTCCCTTCTCCAGGGGATCTTCCCGACCCAGGAATCAAACCAGGGTCTCCCGCATTGCAGGCAGATTCTTTACCAGCTGAGCCACCGGGGAAGCCCATCATTTATTGATACTGCCATGTAATTGACATTCTCATGATTTCATGACTTGGACTGACTTATACATTACTTGTTGTCGAAACTGTGGAAAATTGTGTTGGGATTATTTGCTTCCCTAAGCAGTTGTGGTGTGCTGAGTTATGATGCATTTCTTTGAGAAGTGGTTATTATATTGAAGAAATTTCAAGTGATATAAAACTGGTTACTTAACGCTGAGCTCACTCACTGTTTTCTCCAAACCGCAG
Seq C2 exon
ACCAGCGACACCGATCCAATTCCTTAACCCGAGCCGACAGTCAGCCCCGAGGAGCAGCCATAGCATGGACGGAAAAAAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008:ENSBTAT00000007892:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.739 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGCTGGTGATTTTTCT
R:
CATGCTATGGCTGCTCCTCG
Band lengths:
200-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development