RnoINT0028759 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3387829-3388443:-
Coord C1 exon
chr3:3388352-3388443
Coord A exon
chr3:3387914-3388351
Coord C2 exon
chr3:3387829-3387913
Length
438 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTATTTCTTCCAAATTACAGATC
3' ss Score
7.9
Exon sequences
Seq C1 exon
TGGGAAAGGAGCCTCCACGTTTAGTCCATCCCATCCTTTGTTGCCACTGAGACAGAAGCAGCAGAAAGTGTCACAGGCTGAGGAGATCCCTG
Seq A exon
GTGAGAGCATGAGTCTTTCCCTTTTTTTTTTACTTTTTCTTTTCATGGTTAGTAAAATAATATTCCTTAAAATTAAATGACCTTATTCTAATGTACCCATTTTAGTTAAGAATAGCGGGATAAATTTTAATTTGTATTGCTATAGCTCAGAATTTATAGTCTTGTGTAAATGTCATTTCAACTCTGGTAAGTTCTGTGCTGCATGCACAGAGTGACAGGTCCCAAGTATTCCGCACTGACTACCGTGCTGTAACACTGCACTTCCCGTATTGGAGCTACTGCAGGTTATGCTGTTATGGGCATCGCTTTGAGTGGTGCAGTAGTGGGCTGAGTTAGGATTATTATCACCCACAGAAATGGCTGTTACGCTGAAAGGACTTCAAATGGTACGGAGCTGGTTACTTAACACTGAATGTACTTATTTCTTCCAAATTACAG
Seq C2 exon
ATCAGCGACACAGATCGAATTCTTTAACTCGGGCTGATGGTCAGCCACGAGGTGCAGCAATAGCATGGCCAGATAAAAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]