GgaINT0125776 @ galGal3
Intron Retention
Gene
ENSGALG00000001692 | CAMSAP1
Description
NA
Coordinates
chr17:8894442-8895217:+
Coord C1 exon
chr17:8894442-8894542
Coord A exon
chr17:8894543-8895132
Coord C2 exon
chr17:8895133-8895217
Length
590 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CCGTTTAAAAAATTTTGTAGGCC
3' ss Score
5.86
Exon sequences
Seq C1 exon
AATTAGTGGCAAAGCAGGAAGCCCTGCCTTTAGTCCTTCCCATCCACTGCTCCCTTTGAGACAGAAACAACAAAAGTCTTTACAGGGCGAAGACAGCCCTG
Seq A exon
GTAAGTCTACTTTGAATTTACATTTCAAAAGGCAATACCAATCACTGTCAATACAATAATTAATGAAAAAATACATATGCTAAGTAAAGACAATAAATTTGATCTTAAAGGTACTTCTTGAAAATCTAGGTTTTATGCGCATACAGAATTACTTAGAATTTATTTTCTTTGCTCAGCAATGGTACTGACCAAACTTCATTTCAACTGCCTGGGCTCTTGTAATATGCAGTGATGAAGACTGTTTAAACCAAAACAAACAAACAAAAAAGATGGAGCTGGGGAGTGAGTGGGAGGGATGAGGAAAGCAAACTGAGCACTTCCATGCTTGGAAATGTAGAATTCAAGTCTGTGTATAACCAGATATTTGCAGATGTGTATGCACATGTGTTTTTATATATTTATGTATACACTGCCATTTTTTCAGTGTGTATTTTACCAGGCTTTTGTTTACTTTTCTTTAGTATTTCAGCAAATTTGTTTTCTGCTGCCATCTCTTGGTGAAATAATGTATTATACTTGCTATTAAAGGTGATGAAATTCCTAGCTTAAAGATTGTTTCTAAAACATTACCCGTTTAAAAAATTTTGTAG
Seq C2 exon
GCCATCGACATCGTTCTAATTCTCTGACTCGTGTTGATGGGCAGCCACGAGGTTCAGTTCTTGCATGGCCAGAGAAGAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692:ENSGALT00000002593:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGTGGCAAAGCAGGAAGC
R:
GGTTTCTTCTCTGGCCATGCA
Band lengths:
182-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]