DreINT0040914 @ danRer10
Intron Retention
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64943314-64945088:-
Coord C1 exon
chr5:64944997-64945088
Coord A exon
chr5:64943393-64944996
Coord C2 exon
chr5:64943314-64943392
Length
1604 bp
Sequences
Splice sites
5' ss Seq
CGGGTATTG
5' ss Score
4.87
3' ss Seq
TGTTGTGCTTTTCTTACCAGCTT
3' ss Score
8.3
Exon sequences
Seq C1 exon
TAACAAGGGGAGTTCTGGCTTCAGCCCCTCACATCCACTTCTGCCACTGAGACAAAGACAGAAGAAAGCTCAGCCAGCAGAGGAAAGCACGG
Seq A exon
GTATTGAATCAAACTATGGCCATTCAGTTCAAATATGTTTTTATGCTTGCATGAAAAATGTACATAAAACATGTTGAATCTAATTCAGTTTTTTAATATTTAATGCCTGTATGTAGTTTATGACAGGTAAATCTAATCTGCTTTGTTTTGTTTTATGGCAATCTTTACTTTCAAAAAGATGTATAGAGTTTACAAAACATCATAAAGTGTGAATGTAATAAATTCCTAAAGAAGAATAGATTCATGTTTAGAACACAAGTTAAGAACAATCTCCTAATTAGAATGTTTTTAGGAAATACAAAACGGTGAGATATTTGTAAATGTTCATATATACAAAATAATTATTTTTTAAATATTTTATTTGTTTGCTCATACTTTTCTGACTCTCATTTCTGGTTACCATGAACCAGGAAAACATAGTCATAAAACTGTAATTTGTGAAATAAACTTTAATAAATTTTTACACCTATATTAATGCTGCACGATTCTGGTTAAAATGAGAATCTCAATTTTTTTTTGCTTAAAATCAAGATCACGATTTTCTCACAGTCGGCTGTTATTATTTCTCAAACATACGGTAAAACAGCAATAATAATATTGGGCCTATGTGTAGGTCTACTGTTGGTTTAAATGCTCAATTTTGTATAGACTAGGAATGGTGGACTTGAATAGACTTTGAATATGTCCTGTTGTTAATGCACAGTAAAGTGACGATATCAGAATAAAACTATTCTTAATTCTAAAGATGGATTATTATGTTTGAGACATATGCTTGTCATTTGTCATTGACAACATTATTAGACCATTTTCTTAACTGGTAAAATAAAACATTGTCATTATCAGATTCCCTGTTGCATTATTATTAACATTATATTGGCTAGAGCAGTTATACTGACACTGTGTTAAACATTTATTTTAATGCACAACACTTTGTGTTCGCTATGAAAGAAAACAACATATCAAATGCTTGTCGTAATCATAACTGTAAAATGTGATATGAACATTTAAATGATGTGCACACTTTCAGATACACTTTCACTGCCGAGTGCAGTTCATGTCATGGCTGCCGTCACTTTGAGGAAAAAAGCATACATGCAAATCAAACTTCCCATGTGCCTCTTAAACTATCACTCTGTGCAACAAACTAAACGTTATTTACAACTTTATTAGCTGGTATTCACAGCCTATGCAGGTCCTATTTACTAAAGTAGACATCATTTGCGGGCACACACACATCCTTTCAGTAGTAAACAAACAGTGCGTCAGCTCATGTATCATTCGCAGCCACAAATACATCATTACATTAAGATGGAAATGACATTTTTGGGTGAATTATACCTTATAAATACAGTATGTGACGCTTTTAACGCAGTTTAGAGGTGCCCATGATGCTGAGCAATGTATGTAAAACCACTTAAAAAATAGTGCGACTGATCTATAATTGGCTGAATCGTAAAAAATGCAGAATTAAAATCGTGTGTAGGGTCGAATCAAGATCTTAATCTTTATTCGATTAATCGCGCAGCTCTTATCTATATATTTCAAGGAGTTTGTATGAAAGCAATCAAGTAATCAAATTATCTGTGTTGTGCTTTTCTTACCAG
Seq C2 exon
CTTGTCGAAATCGATCTAATTCATTGACGCAAGAAGGTCATCCCAGAGGATCTGTGGCTTGGTCAGATAAACGGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122:ENSDART00000147707:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]