BtaINT0031112 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17686995-17687596:+
Coord C1 exon
chr7:17686995-17687094
Coord A exon
chr7:17687095-17687483
Coord C2 exon
chr7:17687484-17687596
Length
389 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CATCCCACCTTCCCCCGCAGGGC
3' ss Score
11.56
Exon sequences
Seq C1 exon
GCTCTCGGCTCAGCAAAATCTACTCCCAGTCCACCCTGTCTCTGTCCACGGTGGCCAACGAGGGCCCCAGTAACCTTGGTGTGAAGAGGCCCACGTCTCG
Seq A exon
GTGAGTTTGGCCTGGACGTGCATGTGCCACATGCCTCTCAAGAGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGAGTGTGTGTGTGAATGCATGCCTAGGAGTGTGGTATGGCACAAGGAGCCATATGGTGATATGGTGCCAGAGATGAAAGGTCACACACCTGAGACAGAACCTAAGGATGCGTCTCTCTGCTCCCGTATTCAGCGTGCCCAGGGCTGGGACCTGGCCCTCCAGGGACTTAGGAGCACAGATGGTATCTGTGGATACATCCTGCTTTGCCATTGTCCTGGGCGCACCCTTCCTGGGTCTCACTGCATACTGACTTCGTCCACCACTGACCGCACCCCCACCCCATCCCACCTTCCCCCGCAG
Seq C2 exon
GGCTCCATCTCCATCTGGCCTCATGTCCCCAAGCCGCCTGCCCGGCAGCCGCGAACGTGAGTGGGACAATGGCAGCAACGCATCTTCCCCGGCCTCAGTGCCTGAGTATACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356:ENSBTAT00000015094:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCGGCTCAGCAAAATCT
R:
ACTGAGGCCGGGGAAGATG
Band lengths:
199-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]