RnoINT0028798 @ rn6
Intron Retention
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2156060-2156577:+
Coord C1 exon
chr12:2156060-2156159
Coord A exon
chr12:2156160-2156464
Coord C2 exon
chr12:2156465-2156577
Length
305 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
3' ss Seq
ATCCCTCTCCTCCTCTGCAGGGC
3' ss Score
11.62
Exon sequences
Seq C1 exon
GCTCCCGGCTCAGCAAGGTCTATTCCCAGTCCACACTGTCTCTGTCTACTGTGGCCAATGAGGCTCCCAATAACCTTGGTGTGAAGAGGTCCACGTCTCG
Seq A exon
GTAAGCCTGGGCAAGGGGTCTCTCGGAGCCTCTTACCAGACATAGCTATCTGGGGTCTAGAGTAGGATATGGCTGGACTGCTGGATGAAAGAGAGCACAGGTACACAGATGGTATTTGGGGAAACTGACTCAAGTCTGGAGAATGTGCCCATGTGCAATGTATGTGTATCGGAGGGTGAGCATATGGGACAGCATTGTATAGGCTTGTAGGAAGTGTGCAGTATATGTGGACCTCTCCTCTGCAGCCTCTTTCCTGGGAGGTGTCACACACCCGACCCCACCTTCATCCCTCTCCTCCTCTGCAG
Seq C2 exon
GGCCCCTTCTCCATCAGGCCTCATGTCGCCCAGCCGCCTGCCTGGCAGTCGAGAACGTGACTGGGAGAATGGGAGCAATGCTTCCTCCCCAGCATCAGTGCCTGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986:ENSRNOT00000001305:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGCTCAGCAAGGTCTA
R:
CACTGATGCTGGGGAGGAAG
Band lengths:
198-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]