DreINT0005686 @ danRer10
Intron Retention
Gene
ENSDARG00000059475 | CAMSAP3 (1 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr3:53193248-53193541:+
Coord C1 exon
chr3:53193248-53193341
Coord A exon
chr3:53193342-53193428
Coord C2 exon
chr3:53193429-53193541
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
ACATTAAATTATTTCCACAGTCG
3' ss Score
7.4
Exon sequences
Seq C1 exon
GTTCAAGACTAAATAAAGTTTACTCCCATTCAACAATGAATCTCTCCTCCATGGCCAATGACAGTGGGACATTAACTGTCAGAAAATCTCCAAG
Seq A exon
GTAAACTGATCTGCATGTATTCTCTTGATAAAACACACCTGTTCCTCCTTTGTGAACTAATCTCCGAACATTAAATTATTTCCACAG
Seq C2 exon
TCGTTCTCATTCACCTTCCAGACTGCTGTCTCCAGGACGTCTTGCTGCACAGAATGGGGACTGGGATAATGCATCTACTATTTCATCCCCAGCCTCTATCCCAGAATACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059475:ENSDART00000082715:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAATCTCTCCTCCATGGCC
R:
ATTCTGGGATAGAGGCTGGGG
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]