HsaINT0086971 @ hg19
Intron Retention
Gene
ENSG00000076826 | KIAA1543
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:29307]
Coordinates
chr19:7681409-7682324:+
Coord C1 exon
chr19:7681409-7681508
Coord A exon
chr19:7681509-7682211
Coord C2 exon
chr19:7682212-7682324
Length
703 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCATCCTTCTCCCACTGCAGGGC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GCTCTCGGCTGAGCAAAATCTATTCCCAGTCCACCCTGTCACTGTCCACTGTGGCCAACGAGGCCCACAATAACCTCGGGGTGAAGAGGCCCACGTCTCG
Seq A exon
GTGAGTTTAGCCCGCACAGGCGGGGTTCGTATGCCGGGTGGCTTCCCAGAGCCTGGGAGGTGTGTGGGCATCTGGGTGAACCTAGAGGGCGGTATGGCTCGAGTTTATGGATACGCCATGAAGAGATGGAGGGACGCGTGTGGGCACGTGTGCATGGGGCATAGTCTGTACCTGGCAGACAGGACTCAAGCATGTGCCTCAGTGCACTTGAGTGCCAGGTGTTCCTGTGGGAGGAGGACAGCACGGGGCACTGCATGGACTTGGGAGGGTGTGCAGTGTATACCGCCTCCTCTGCAGTGTGTGTGGCCCGCCTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTGAGAGGGAGTCTTGCTGTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACGGCAACCTCCGCCCCCTGGGTGCAAGTGATTCTCGTGCCTCAGCCTCCTGAGTAGCTGGGGTTACCCGTGCCTGTAGAGACGGTGTTTCACCATGTTGGCCAGGCTGGCCTCGAACTCCCGACCTCAAGTGATCTGCCCGCTTTGGCCTCCCGAAGTGCTGGGATTACAGGCATGAGCCACGATGCCCAGCCGTGGCCCTTATTTTCCTTGGCCCCTCTGCACATAGGGAAGCTTCCCATCTCTGACCCCACCTCCATCCCATCCTGACCCCACCTCCATCCCATCCTTCTCCCACTGCAG
Seq C2 exon
GGCTCCCTCCCCGTCAGGTCTCATGTCCCCAAGCCGCCTGCCTGGAAGCCGCGAACGGGACTGGGAAAATGGCAGCAATGCCTCCTCCCCAGCGTCAGTGCCCGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826-KIAA1543:NM_020902:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCTGAGCAAAATCTATTCCC
R:
CTGTGTACTCGGGCACTGAC
Band lengths:
209-912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)