HsaINT0086971 @ hg38
Intron Retention
Gene
ENSG00000076826 | CAMSAP3
Description
calmodulin regulated spectrin associated protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr19:7616523-7617438:+
Coord C1 exon
chr19:7616523-7616622
Coord A exon
chr19:7616623-7617325
Coord C2 exon
chr19:7617326-7617438
Length
703 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCATCCTTCTCCCACTGCAGGGC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GCTCTCGGCTGAGCAAAATCTATTCCCAGTCCACCCTGTCACTGTCCACTGTGGCCAACGAGGCCCACAATAACCTCGGGGTGAAGAGGCCCACGTCTCG
Seq A exon
GTGAGTTTAGCCCGCACAGGCGGGGTTCGTATGCCGGGTGGCTTCCCAGAGCCTGGGAGGTGTGTGGGCATCTGGGTGAACCTAGAGGGCGGTATGGCTCGAGTTTATGGATACGCCATGAAGAGATGGAGGGACGCGTGTGGGCACGTGTGCATGGGGCATAGTCTGTACCTGGCAGACAGGACTCAAGCATGTGCCTCAGTGCACTTGAGTGCCAGGTGTTCCTGTGGGAGGAGGACAGCACGGGGCACTGCATGGACTTGGGAGGGTGTGCAGTGTATACCGCCTCCTCTGCAGTGTGTGTGGCCCGCCTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTGAGAGGGAGTCTTGCTGTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACGGCAACCTCCGCCCCCTGGGTGCAAGTGATTCTCGTGCCTCAGCCTCCTGAGTAGCTGGGGTTACCCGTGCCTGTAGAGACGGTGTTTCACCATGTTGGCCAGGCTGGCCTCGAACTCCCGACCTCAAGTGATCTGCCCGCTTTGGCCTCCCGAAGTGCTGGGATTACAGGCATGAGCCACGATGCCCAGCCGTGGCCCTTATTTTCCTTGGCCCCTCTGCACATAGGGAAGCTTCCCATCTCTGACCCCACCTCCATCCCATCCTGACCCCACCTCCATCCCATCCTTCTCCCACTGCAG
Seq C2 exon
GGCTCCCTCCCCGTCAGGTCTCATGTCCCCAAGCCGCCTGCCTGGAAGCCGCGAACGGGACTGGGAAAATGGCAGCAATGCCTCCTCCCCAGCGTCAGTGCCCGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826:ENST00000160298:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCTGAGCAAAATCTATTCCC
R:
CTGTGTACTCGGGCACTGAC
Band lengths:
209-912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development