BtaINT0031120 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17682440-17682675:+
Coord C1 exon
chr7:17682440-17682533
Coord A exon
chr7:17682534-17682623
Coord C2 exon
chr7:17682624-17682675
Length
90 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
ACCCTCTGCTCTGTGTACAGCCG
3' ss Score
8.2
Exon sequences
Seq C1 exon
GTCAACCTGATGGTGCTGCTGGCTGAGTTGTTCATGTGCTTCGAGGTGCTGAAACCCGACTTTGTGCAGGTCAAGGATCTGCCTGATGGTCACG
Seq A exon
GTAAGGCCTGGCCCCGGGCCTGGGGTGGGGTGAGGTTGAGGGGGATAGTGGGAAGACCAAGCCCTGCCTGACCCTCTGCTCTGTGTACAG
Seq C2 exon
CCGCCTCCCCCCAGGCCACAGAGGCCTCTACTCCCCAGAACAGCGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356:ENSBTAT00000015094:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGGTGCTGCTGGC
R:
CCGCTGTTCTGGGGAGTAGAG
Band lengths:
135-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]