HsaINT0086979 @ hg19
Intron Retention
Gene
ENSG00000076826 | KIAA1543
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:29307]
Coordinates
chr19:7675586-7675817:+
Coord C1 exon
chr19:7675586-7675679
Coord A exon
chr19:7675680-7675762
Coord C2 exon
chr19:7675763-7675817
Length
83 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CCCTCTTCTCTGTACTGCAGCTG
3' ss Score
10.24
Exon sequences
Seq C1 exon
GTCAACTTGGTGGTGATGCTGGCCGAGTTGTTCATGTGTTTTGAGGTGCTCAAGCCCGACTTTGTGCAAGTGAAGGACTTGCCCGATGGTCACG
Seq A exon
GTGAGGCCCTGGGGGCCTGGGGGCCGGGTCGGGGGCGGGTGGGAGAGCCAAACCCCCGCCTGACCCTCTTCTCTGTACTGCAG
Seq C2 exon
CTGCCTCCCCCCGGGGCACTGAGGCCTCCCCACCTCAGAACAACAGCGGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826-KIAA1543:NM_020902:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTTGGTGGTGATGCTGG
R:
TACTGCCGCTGTTGTTCTGAG
Band lengths:
147-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)