GgaINT0125774 @ galGal4
Intron Retention
Gene
ENSGALG00000001692 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr17:8198032-8198733:+
Coord C1 exon
chr17:8198032-8198128
Coord A exon
chr17:8198129-8198555
Coord C2 exon
chr17:8198556-8198733
Length
427 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AATTTTTAATATGTACACAGTTA
3' ss Score
3.56
Exon sequences
Seq C1 exon
CCTAACATCATGGTATTCATTGCGGAACTCTTCTGGTGGTTTGAGAATGTCAAACCAGACTTTGTACAGCCAAGAGATGTTCAGGAAATAAAGGATG
Seq A exon
GTAAGTCTTATATGTTTCATAAATATTAGTTGGTTATTTCAAAATATTTACATCAGAATGAAGAACTGTTACATATTGCTGTTTGCTTTGGAGCTTGCTTTCTACCTATGCTTTCTGCTTGCTGCAGCTTTGAAAGCAGGAAAAAGTGGAAGGCAGGTTAGTCCTAAATCCAGTTGTGGATTGGGTTCGAAGTTTTGGAATGTAATAAGCAGATTTTGTTTTACTCCAGCCCACTCGTTATCTGCTTCCTTCCCAATAAAGCCACCAGAATATGTTTTTTAAATACAGGTTATTACTTCTACTACTGCATTTCAGTTTTATGTCACAAAATTGTCACTATGGTGTACTGCTGTTTGAAACTTCCTTTTGTGCTTTGTTATTTTAATGGTTATTTATAACATTAACACAATTTTTAATATGTACACAG
Seq C2 exon
TTAAAACAGTGTTGCAGCAGAAGAACAGCCGCCCACCTGTTCCCATCTCCAACGCAACTAAGAGAAGTTTCATGGCTAGTCCTGCAAGTACAAATCCAGCAGATGTGCAGCCCTCAGCTCAGGCAGGCTCTGAAGCTTGCAGTAGATACTACCTGCACCCTGAAGAACCTGACTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692:ENSGALT00000002593:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.633
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(9.6=42.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCATGGTATTCATTGCGGA
R:
GCAGTCAGGTTCTTCAGGGTG
Band lengths:
270-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]