BtaINT0031085 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103459001-103459889:-
Coord C1 exon
chr11:103459793-103459889
Coord A exon
chr11:103459131-103459792
Coord C2 exon
chr11:103459001-103459130
Length
662 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTATAAAATTGTTTCTGCAGCTA
3' ss Score
7.19
Exon sequences
Seq C1 exon
CCAAATGTTATGGTTTTTATTGCTGAGCTGTTCTGGTGGTTTGAGAACGTCAAGCCAGATTTTGTCCAGCCCAGGGATGTTCAGGAACTGAAGGATG
Seq A exon
GTGAGTGGCAAACTTCTGTGCATAAGAGTGCTCAGGAGGTGTGGTTACAGGCTCCTGCCTTCATGCAGCAGTGGAGTTTAATCAGGGCTTTCTCTAGGGAGCACCAGGGAGCTCGATGGGCTGTGAGCGGTCTGCCTCCAAAGTCCAGGTCTGACCACCAGGACTGTCACTGGCACCATCTTTCTTGGACGAGTGTTCTGGGAGCAGCTTCAGGCTGGGCCCGACCTCTACCCCTGAGCCCATGGGGCTTGAGCTGCAGTGACCACTGAGGTGCTCAGTCGCAGGCTGGGCCCAGCCGACGGCTGCCCCCTGAGGGTTTGGCTGCAGGGCGCCCTGGTCGGCTCGGTCCCCAGGCCCAGTGAGGAGGCTGCGTGTTAGGGGTCCATGCACCCTCCCTTGCTGCTCTAGTCTGGCTTGTGTCTTTTGATTTTAGTACTTATTTTGTTAAAATATTTGTTTGATTCATTACAAAATATACCTAATGACCTTGAAACCAGGTTGTTTTTTTTTTTTTTTTTTTTTCTGAGAAGTTTAGTTTCATGTAAAAGTTTTGTTTTTAGTACTCATGAAAATGGATTTATTTTTCTTAAAGATTCTTCTCGCTAGTGTTGTCAGTAGCGGTAAATAACAAGACTACTATTCCTATAAAATTGTTTCTGCAG
Seq C2 exon
CTAAATCAGTGTCGTACCCCAAAAGCAGCCGGCCCCCAGTTCCCATCTCCAACGCCACCAAGCGCAGCTTCCTGGGCAGCCCCGCGGCGGCGAGCCCGGCCGACCTGCAGCTCGGGGAGCCCGAGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008:ENSBTAT00000007892:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.705
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(9.6=42.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTTATGGTTTTTATTGCTGAGC
R:
CTCCCCGAGCTGCAGGTC
Band lengths:
214-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development